Non-Coding RNA Search

Ss1.1-Pig2-105E13.5

Sequence:


               
               GCGCTGCGGCGGGAGCCTGGAGGACGGTGAGCTGCCTTGTGGTGTCCGGAGCCCAGCCCT
GCCTGGCGGGGCCGCGAGCCCTGGGCGGCACCAGGTGCCCGGAAGTTTGGGCACCGCCTC
TGGAACTCCTTGGCCACCAGCAGACAGGATGGGAGCTCCCTGCATCCTGTTCTGTGGGCA
TGGGTAGGCAGAGCCAAGCATGGGGGACCCCTGTGGGGTGTGTGTGTGCTAGGAACTGCC
TCACACCTGATAAAAAAGCCAGTGGAGGAGTGAGTGCTGCTATTTTAAGTTGTTGAATGG
ATCCTCTGAGGATGATTAGGGGAGGGAACAAAGATTAGGCAGAGAAAGTGTTAGGGTACC
CCACCAGGCTGGGCAGGCACTGGATGTGCCAAGTGGGGTACACCCCAAAGGGCAGCTAGA
GTTCCATAGCTGCCTGGGTTCCCCTCCCCCTCTAGGACCGTCCAAGCCCTGCCAGTTTTA
GTGGCCTTGGGTGCTTGCCTCCTGCCCCTTGGTGCTGCCTGCTGATGTGCCCAGCCTGTG
CCCACCATGCCGCCCTCCATCTCGGCCTTCCAGGCCGCCTATATGGGCATCGAGGTGCTC
ATCGCCCTAGTCTCCGTGCCTGGGAACGTGCTGGTGATCTGGGCAGTGAAGGTGAACCAG
GCACTGCGGGATGCTACCTTCTGCTTCATCGTGTCACTGGCAGTGGCTGATGTGGCAGTG
GGTGCTCTGGTCATCCCACTTGCCATCCTCATCAACATTGGGCCACAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGCTGCGGCGGGAGCCTGGAGGACGGTGAGCTGCCTTGTGGTGTCCGGAGCCCAGCCCT
GCCTGGCGGGGCCGCGAGCCCTGGGCGGCACCAGGTGCCCGGAAGTTTGGGCACCGCCTC
TGGAACTCCTTGGCCACCAGCAGACAGGATGGGAGCTCCCTGCATCCTGTTCTGTGGGCA
TGGGTAGGCAGAGCCAAGCATGGGGGACCCCTGTGGGGTGTGTGTGTGCTAGGAACTGCC
TCACACCTGATAAAAAAGCCAGTGGAGGAGTGAGTGCTGCTATTTTAAGTTGTTGAATGG
ATCCTCTGAGGATGATTAGGGGAGGGAACAAAGATTAGGCAGAGAAAGTGTTAGGGTACC
CCACCAGGCTGGGCAGGCACTGGATGTGCCAAGTGGGGTACACCCCAAAGGGCAGCTAGA
GTTCCATAGCTGCCTGGGTTCCCCTCCCCCTCTAGGACCGTCCAAGCCCTGCCAGTTTTA
GTGGCCTTGGGTGCTTGCCTCCTGCCCCTTGGTGCTGCCTGCTGATGTGCCCAGCCTGTG
CCCACCATGCCGCCCTCCATCTCGGCCTTCCAGGCCGCCTATATGGGCATCGAGGTGCTC
ATCGCCCTAGTCTCCGTGCCTGGGAACGTGCTGGTGATCTGGGCAGTGAAGGTGAACCAG
GCACTGCGGGATGCTACCTTCTGCTTCATCGTGTCACTGGCAGTGGCTGATGTGGCAGTG
GGTGCTCTGGTCATCCCACTTGCCATCCTCATCAACATTGGGCCACAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|4884858|gb|AAD31843.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|4884858|gb|AAD31843.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               295-450, - strand, RNAz p=0.633602
               

               
               528-647, - strand, RNAz p=0.855005

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               295-450, - strand, RNAz p=0.633602
               

               
               528-647, - strand, RNAz p=0.855005

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               11-764, gnl|bosTau2|chr16 (2291840-2292594)
               

               
               11-764, gnl|Hg17|chr1 (199829071-199829844)
               

               
               11-764, gnl|Mm7|chr1 (134124663-134123923)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-764, gnl|bosTau2|chr16 (2291840-2292594)
               

               
               11-764, gnl|Hg17|chr1 (199829071-199829844)
               

               
               11-764, gnl|Mm7|chr1 (134124663-134123923)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	295-450, - strand, RNAz p=0.633602
	528-647, - strand, RNAz p=0.855005

	11-764, gnl\|bosTau2\|chr16 (2291840-2292594)
	11-764, gnl\|Hg17\|chr1 (199829071-199829844)
	11-764, gnl\|Mm7\|chr1 (134124663-134123923)