Non-Coding RNA Search

Ss1.1-Pig2-105H11.5

Sequence:


               
               AGTGTTCTTATTGCTCAGAGCTGGGCATATTTAGTGTGGCCTTTCGTTCAAGTTAGAACA
AAGCAAATAGAAGCGCATTATTATTGCCGAGATGTTTGTCCCAAAGCAGGACCCGTAGCT
TCTTCCTCGATCGCCGGGACAGGCTTCTTCTAATTGGGCAGCGAGTGTCCGCGCTGACGC
AGGAAGCCCGCCTCATTGGTCCGGTGCAGTCGGGACTCAGGCGGCTTTTCTCTTAGTGCT
CTAGGCTCCGACCAGCTTTTCTTCCTGCAACCGAGGGAACCCTTCTTTCCGAAGTGCCAG
GAGTTGCCAGACTGAAGGGATCCGGACTGAGCTAGTCCGGGTAACTGCACTGAGGCACCA
TGACGACCCTGGATGATAAATTGCTGGGGGAGAAGCTGCAGTACTATTACAGCAGCAGTG
AGGATGAGGACAGCGACCATGAGGACAAGGAAAGGGGCAGGGGTGCCCTGGCTGGCAGTT
CCATGCCTGCAGATGCTGAGCTGGCAGGTGAAGGCATCTCGGTCAACACAGGTCCGAAAG
GCGTGATCCATGACTGGCGGCGCTACAAACAGCTGGAGACAGAGCAGCGGGAGGAGCAGT
GCCGGGAGATGGAGAGACTGATCAAGAAGCTGTCCATGAGCTGCAGGTCCCATCTGGACG
AGGAGGAGGAGCAGCAGAAGCAGAAGGACCTCCAGGAGAAGATCAGTGGGAAGATGACTC
TGAAGGACTTTGCCATGCTGAACGAGGACCAAGACGACGAGGAGTTTCTGCAGCAGTACC
GGAAGCAGAGGATGGAAGAGATGCGGCAGCAGCTCCACAAGGGGCCGCAGTTCAAGCAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGTTCTTATTGCTCAGAGCTGGGCATATTTAGTGTGGCCTTTCGTTCAAGTTAGAACA
AAGCAAATAGAAGCGCATTATTATTGCCGAGATGTTTGTCCCAAAGCAGGACCCGTAGCT
TCTTCCTCGATCGCCGGGACAGGCTTCTTCTAATTGGGCAGCGAGTGTCCGCGCTGACGC
AGGAAGCCCGCCTCATTGGTCCGGTGCAGTCGGGACTCAGGCGGCTTTTCTCTTAGTGCT
CTAGGCTCCGACCAGCTTTTCTTCCTGCAACCGAGGGAACCCTTCTTTCCGAAGTGCCAG
GAGTTGCCAGACTGAAGGGATCCGGACTGAGCTAGTCCGGGTAACTGCACTGAGGCACCA
TGACGACCCTGGATGATAAATTGCTGGGGGAGAAGCTGCAGTACTATTACAGCAGCAGTG
AGGATGAGGACAGCGACCATGAGGACAAGGAAAGGGGCAGGGGTGCCCTGGCTGGCAGTT
CCATGCCTGCAGATGCTGAGCTGGCAGGTGAAGGCATCTCGGTCAACACAGGTCCGAAAG
GCGTGATCCATGACTGGCGGCGCTACAAACAGCTGGAGACAGAGCAGCGGGAGGAGCAGT
GCCGGGAGATGGAGAGACTGATCAAGAAGCTGTCCATGAGCTGCAGGTCCCATCTGGACG
AGGAGGAGGAGCAGCAGAAGCAGAAGGACCTCCAGGAGAAGATCAGTGGGAAGATGACTC
TGAAGGACTTTGCCATGCTGAACGAGGACCAAGACGACGAGGAGTTTCTGCAGCAGTACC
GGAAGCAGAGGATGGAAGAGATGCGGCAGCAGCTCCACAAGGGGCCGCAGTTCAAGCAGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9UNX2_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9UNX2_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               604-728, + strand, RNAz p=0.943539

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               604-728, + strand, RNAz p=0.943539

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               3-355, gnl|bosTau2|chr11 (75302124-75301777)
               

               
               3-355, gnl|canFam2|chr9 (63287430-63286592)
               

               
               3-355, gnl|dasNov1|scaffold_38189 (4556-5253)
               

               
               3-355, gnl|echTel1|scaffold_321342 (9037-8239)
               

               
               3-355, gnl|hg17|chr9 (122669841-122670594)
               

               
               3-355, gnl|Hg17|chr9 (122670649-122670289)
               

               
               3-355, gnl|loxAfr1|scaffold_39569 (4631-3871)
               

               
               3-355, gnl|mm7|chr2 (37365797-37366709)
               

               
               3-355, gnl|oryCun1|scaffold_198144 (6458-7286)
               

               
               3-355, gnl|panTro1|chr11 (107379510-107380270)
               

               
               3-355, gnl|rheMac2|chr15 (12904411-12903650)
               

               
               3-355, gnl|rn3|chr3 (17012040-17012964)
               


               
               524-728, gnl|bosTau2|chr11 (75296079-75295876)
               

               
               524-728, gnl|Hg17|chr9 (122665036-122664835)
               

               
               524-728, gnl|Mm7|chr2 (37363134-37362943)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-355, gnl|bosTau2|chr11 (75302124-75301777)
               

               
               3-355, gnl|canFam2|chr9 (63287430-63286592)
               

               
               3-355, gnl|dasNov1|scaffold_38189 (4556-5253)
               

               
               3-355, gnl|echTel1|scaffold_321342 (9037-8239)
               

               
               3-355, gnl|hg17|chr9 (122669841-122670594)
               

               
               3-355, gnl|Hg17|chr9 (122670649-122670289)
               

               
               3-355, gnl|loxAfr1|scaffold_39569 (4631-3871)
               

               
               3-355, gnl|mm7|chr2 (37365797-37366709)
               

               
               3-355, gnl|oryCun1|scaffold_198144 (6458-7286)
               

               
               3-355, gnl|panTro1|chr11 (107379510-107380270)
               

               
               3-355, gnl|rheMac2|chr15 (12904411-12903650)
               

               
               3-355, gnl|rn3|chr3 (17012040-17012964)
               


               
               524-728, gnl|bosTau2|chr11 (75296079-75295876)
               

               
               524-728, gnl|Hg17|chr9 (122665036-122664835)
               

               
               524-728, gnl|Mm7|chr2 (37363134-37362943)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               fty (0.17584)
               

               
               lun (0.150489)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               lun (0.150489)
               

               
               clu (0.119646)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

	3-355, gnl\|bosTau2\|chr11 (75302124-75301777)
	3-355, gnl\|canFam2\|chr9 (63287430-63286592)
	3-355, gnl\|dasNov1\|scaffold_38189 (4556-5253)
	3-355, gnl\|echTel1\|scaffold_321342 (9037-8239)
	3-355, gnl\|hg17\|chr9 (122669841-122670594)
	3-355, gnl\|Hg17\|chr9 (122670649-122670289)
	3-355, gnl\|loxAfr1\|scaffold_39569 (4631-3871)
	3-355, gnl\|mm7\|chr2 (37365797-37366709)
	3-355, gnl\|oryCun1\|scaffold_198144 (6458-7286)
	3-355, gnl\|panTro1\|chr11 (107379510-107380270)
	3-355, gnl\|rheMac2\|chr15 (12904411-12903650)
	3-355, gnl\|rn3\|chr3 (17012040-17012964)

	524-728, gnl\|bosTau2\|chr11 (75296079-75295876)
	524-728, gnl\|Hg17\|chr9 (122665036-122664835)
	524-728, gnl\|Mm7\|chr2 (37363134-37362943)

	fty (0.17584)
	lun (0.150489)
	clu (0.119646)
	pgl (0.118483)
	ebs (0.118301)