Non-Coding RNA Search

Ss1.1-Pig2-105I12.5

Sequence:


               
               CTCAGCTGTCTGTGTCTCTCCCGACCATGACATCTATCTGGCCGCCCAGCCCCGGAAAGA
CCTCTGGGTGTACAAACCAGCCCAGAATAGTTGGCAGCAGCTGGCAGACCGCCTGCTCTG
CCGGGAGGGCATGGATGTGGCTTACCTCAACGGCTACATTTACATTTTGGGTGGGCGGGA
CCCTGTTACTGGAGTTAAATTAAAGGAGGTGGAGTGCTACAGTGTTCAGAGAAACCAGTG
GGCCCTAGTGGCTCCCGTACCCCATTCCTTCTATTCCTTTGAACTGATTGTGGTTCAGAA
CTATCTTTATGCTGTGAACAGCAAGCGCATGCTCTGCTACGATCCCAGCCATAACATGTG
GCTGAACTGTGCTTCTCTTAAACGCAGTGACTTCCAGGAGGCCTGTGTCTTCAATGATGA
GATCTATTGTATCTGTGACATCCCCGTCATGAAGGTGTATAACCCGGCCAGGGGAGAATG
GAGGCGGATCAGTAATATTCCCCTGGACTCCGAGACCCACAACTACCAGATTGTCAATCA
TGGCCAAAAGCTGCTCCTCATCACTTCTACAACCCCGCAGTGGAAGAAAAACCGGGTGAC
TGTGTATGAATATGATACTAGGGAAGACCAGTGGATTAATATAGGTACCATGTTAGGCCT
CTTGCAGTTTGACTCTGGCTTTATTTGCCTCTGTGCTCGAGTTTATCCCTCCTGCCTTGA
ACCTGGTCAGAGTTTCATCACCGAGGAAGATGATGCACGGAGTGAGTCTAGTACTGAATG
GGACTTAGATGGATTCAGTGAGCTGGACTCTGAGTCAGGAAGTTCAAGTTCTTTTACCGA
CGATGAAGTCTGGGTACAGGTAGCACCTCAGCGAAATGCACAGGATCAGCAGGGTTCTTT
GTAAATAGTTTGAAATACTAAGCTATTTCTACTGCTGTGGAATGTATATTAAAACGATGT
GTCCCTTCCTTTTCCTGAAAAAAAGAAAACAAAGGTTGACCAAGACTGCCGATTTGGTTT
AGAAAAGGTAATGTTTTGCTAATGTAATGTTACAGAATTTAAACAGTCCATGAAATCAAC
TTATATTATAATTTACTGTGCTGAAAGTCAAGATTAAAATACGCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCAGCTGTCTGTGTCTCTCCCGACCATGACATCTATCTGGCCGCCCAGCCCCGGAAAGA
CCTCTGGGTGTACAAACCAGCCCAGAATAGTTGGCAGCAGCTGGCAGACCGCCTGCTCTG
CCGGGAGGGCATGGATGTGGCTTACCTCAACGGCTACATTTACATTTTGGGTGGGCGGGA
CCCTGTTACTGGAGTTAAATTAAAGGAGGTGGAGTGCTACAGTGTTCAGAGAAACCAGTG
GGCCCTAGTGGCTCCCGTACCCCATTCCTTCTATTCCTTTGAACTGATTGTGGTTCAGAA
CTATCTTTATGCTGTGAACAGCAAGCGCATGCTCTGCTACGATCCCAGCCATAACATGTG
GCTGAACTGTGCTTCTCTTAAACGCAGTGACTTCCAGGAGGCCTGTGTCTTCAATGATGA
GATCTATTGTATCTGTGACATCCCCGTCATGAAGGTGTATAACCCGGCCAGGGGAGAATG
GAGGCGGATCAGTAATATTCCCCTGGACTCCGAGACCCACAACTACCAGATTGTCAATCA
TGGCCAAAAGCTGCTCCTCATCACTTCTACAACCCCGCAGTGGAAGAAAAACCGGGTGAC
TGTGTATGAATATGATACTAGGGAAGACCAGTGGATTAATATAGGTACCATGTTAGGCCT
CTTGCAGTTTGACTCTGGCTTTATTTGCCTCTGTGCTCGAGTTTATCCCTCCTGCCTTGA
ACCTGGTCAGAGTTTCATCACCGAGGAAGATGATGCACGGAGTGAGTCTAGTACTGAATG
GGACTTAGATGGATTCAGTGAGCTGGACTCTGAGTCAGGAAGTTCAAGTTCTTTTACCGA
CGATGAAGTCTGGGTACAGGTAGCACCTCAGCGAAATGCACAGGATCAGCAGGGTTCTTT
GTAAATAGTTTGAAATACTAAGCTATTTCTACTGCTGTGGAATGTATATTAAAACGATGT
GTCCCTTCCTTTTCCTGAAAAAAAGAAAACAAAGGTTGACCAAGACTGCCGATTTGGTTT
AGAAAAGGTAATGTTTTGCTAATGTAATGTTACAGAATTTAAACAGTCCATGAAATCAAC
TTATATTATAATTTACTGTGCTGAAAGTCAAGATTAAAATACGCAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61875278|ref|XP_580490.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61875278|ref|XP_580490.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               2-320, + strand, RNAz p=0.882097

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-320, + strand, RNAz p=0.882097

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_032138, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_032138, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-1128, gnl|bosTau2|chr12 (4555992-4554869)
               

               
               2-1128, gnl|Hg17|chr13 (40665241-40664128)
               

               
               2-1128, gnl|Mm7|chr14 (74108601-74109718)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1128, gnl|bosTau2|chr12 (4555992-4554869)
               

               
               2-1128, gnl|Hg17|chr13 (40665241-40664128)
               

               
               2-1128, gnl|Mm7|chr14 (74108601-74109718)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cte (0.58548)
               

               
               ssp (0.271039)
               

               
               ova (0.129132)
               

               
               bla (0.124347)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.58548)
               

               
               ssp (0.271039)
               

               
               ova (0.129132)
               

               
               bla (0.124347)

	2-1128, gnl\|bosTau2\|chr12 (4555992-4554869)
	2-1128, gnl\|Hg17\|chr13 (40665241-40664128)
	2-1128, gnl\|Mm7\|chr14 (74108601-74109718)