Non-Coding RNA Search

Ss1.1-Pig2-106C15.5

Sequence:


               
               ATTTCTTGGGGCATCTTCCAATTTCACCTGTACTTGCTGCATGGGGATTCGCCGATTCTA
AGTCTTTTTAGCTGGCACTTGGAGGAGTAAAGAACCAGCTTTCTACCTCACTTCTTTTAC
TGTCATCCTTTCTCCAGGTTCTGATATCTCCTGTGCTTTCCATCACTTTTCACAGCTGCT
ATTTCTTCCCAAGAATGGCAGTCATGCTTGCCTTTTCTCATGTTCAAGCTGATGATGGAC
AAAGCATGGTGCCAAGACTCAGTCCTAGTGGAGGATTTGTGGTGCTAATTGCAACACTTG
ATATTGATAGCAAGCATGGCCCAGCCCAACCCAATGTCTCTTTCAAATAGCAGAAAAGTT
TTAAATTTAGAAAAAAAGAATTTAAGATTACAGGCAGCCTCATCCTGTACCCTCAATTCC
CTTGAAATAGGAGGAAACCACCTTTTGCCTTACTCTTTTTATTCTTTTCTAAGGACAGAG
GAGAAGGCATCTACACCACAAGAAGTGTGAGCCAAATGGATTCATCAGGCGGTTGAATGG
TTTATCACTTCTCTCTTGCTGAGTTTACTCTTAATAACTTTTATCAGTTGCTACCTTTTA
CTTCTGTGTTTAATCTAAAGAGACCTTTCTCTTTCATACCTTTTGCCTATCACCTATGAA
TTCCAATGAGAAAATGTACCGTTTCTTACTGTTATTAAATAATTGGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTCTTGGGGCATCTTCCAATTTCACCTGTACTTGCTGCATGGGGATTCGCCGATTCTA
AGTCTTTTTAGCTGGCACTTGGAGGAGTAAAGAACCAGCTTTCTACCTCACTTCTTTTAC
TGTCATCCTTTCTCCAGGTTCTGATATCTCCTGTGCTTTCCATCACTTTTCACAGCTGCT
ATTTCTTCCCAAGAATGGCAGTCATGCTTGCCTTTTCTCATGTTCAAGCTGATGATGGAC
AAAGCATGGTGCCAAGACTCAGTCCTAGTGGAGGATTTGTGGTGCTAATTGCAACACTTG
ATATTGATAGCAAGCATGGCCCAGCCCAACCCAATGTCTCTTTCAAATAGCAGAAAAGTT
TTAAATTTAGAAAAAAAGAATTTAAGATTACAGGCAGCCTCATCCTGTACCCTCAATTCC
CTTGAAATAGGAGGAAACCACCTTTTGCCTTACTCTTTTTATTCTTTTCTAAGGACAGAG
GAGAAGGCATCTACACCACAAGAAGTGTGAGCCAAATGGATTCATCAGGCGGTTGAATGG
TTTATCACTTCTCTCTTGCTGAGTTTACTCTTAATAACTTTTATCAGTTGCTACCTTTTA
CTTCTGTGTTTAATCTAAAGAGACCTTTCTCTTTCATACCTTTTGCCTATCACCTATGAA
TTCCAATGAGAAAATGTACCGTTTCTTACTGTTATTAAATAATTGGAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               66-183, + strand, RNAz p=0.999846
               

               
               360-528, - strand, RNAz p=0.974015

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               66-183, + strand, RNAz p=0.999846
               

               
               360-528, - strand, RNAz p=0.974015

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of NM_017919, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_017919, +

Aligned organism(s): 13 entry(ies)

More info

Aligned organism(s): 13 entry(ies)

Help | Less info


               
               1-708, gnl|bosTau2|chr27 (1492510-1491775)
               

               
               1-708, gnl|canFam2|chr11 (59976753-59977274)
               

               
               1-708, gnl|danRer3|chrNA (76267534-76267123)
               

               
               1-708, gnl|dasNov1|scaffold_2304 (63914-64407)
               

               
               1-708, gnl|echTel1|scaffold_299277 (3984-3533)
               

               
               1-708, gnl|hg17|chr9 (99811388-99811893)
               

               
               1-708, gnl|Hg17|chr9 (99811469-99812170)
               

               
               1-708, gnl|loxAfr1|scaffold_4458 (27063-27586)
               

               
               1-708, gnl|mm7|chr4 (48196305-48196686)
               

               
               1-708, gnl|oryCun1|scaffold_214071 (50164-50670)
               

               
               1-708, gnl|panTro1|chr11 (84041177-84041676)
               

               
               1-708, gnl|rheMac2|chr15 (36250460-36249943)
               

               
               1-708, gnl|rn3|chr5 (64859537-64859921)

Aligned organism(s): 13 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-708, gnl|bosTau2|chr27 (1492510-1491775)
               

               
               1-708, gnl|canFam2|chr11 (59976753-59977274)
               

               
               1-708, gnl|danRer3|chrNA (76267534-76267123)
               

               
               1-708, gnl|dasNov1|scaffold_2304 (63914-64407)
               

               
               1-708, gnl|echTel1|scaffold_299277 (3984-3533)
               

               
               1-708, gnl|hg17|chr9 (99811388-99811893)
               

               
               1-708, gnl|Hg17|chr9 (99811469-99812170)
               

               
               1-708, gnl|loxAfr1|scaffold_4458 (27063-27586)
               

               
               1-708, gnl|mm7|chr4 (48196305-48196686)
               

               
               1-708, gnl|oryCun1|scaffold_214071 (50164-50670)
               

               
               1-708, gnl|panTro1|chr11 (84041177-84041676)
               

               
               1-708, gnl|rheMac2|chr15 (36250460-36249943)
               

               
               1-708, gnl|rn3|chr5 (64859537-64859921)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               thg (0.126791)
               

               
               spc (0.113366)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.126791)
               

               
               spc (0.113366)

	66-183, + strand, RNAz p=0.999846
	360-528, - strand, RNAz p=0.974015

	1-708, gnl\|bosTau2\|chr27 (1492510-1491775)
	1-708, gnl\|canFam2\|chr11 (59976753-59977274)
	1-708, gnl\|danRer3\|chrNA (76267534-76267123)
	1-708, gnl\|dasNov1\|scaffold_2304 (63914-64407)
	1-708, gnl\|echTel1\|scaffold_299277 (3984-3533)
	1-708, gnl\|hg17\|chr9 (99811388-99811893)
	1-708, gnl\|Hg17\|chr9 (99811469-99812170)
	1-708, gnl\|loxAfr1\|scaffold_4458 (27063-27586)
	1-708, gnl\|mm7\|chr4 (48196305-48196686)
	1-708, gnl\|oryCun1\|scaffold_214071 (50164-50670)
	1-708, gnl\|panTro1\|chr11 (84041177-84041676)
	1-708, gnl\|rheMac2\|chr15 (36250460-36249943)
	1-708, gnl\|rn3\|chr5 (64859537-64859921)