Ss1.1-Pig2-106M15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGGTGCCGGGGTCATCGGGATGATGCGGACGCAGTGTCTGCTGGGGCTGCGCACGTTCG TGGCCTTCGCCGCCAAGCTCTGGAGCTTCTTCATTTACCTTTTGCGGAGGCAGATCCGCA CGGTAATTCAGTACCAAACCGTTCGATATGATATCCTTCCCTTATCTCCCGTGTCCCGAA ATCGGCTAAGCCAGGTGAAGAGGAAGATCCTGGTGCTGGATCTGGACGAGACGCTTATTC ACTCCCATCATGATGGGGTCCTGAGGCCCACAGTCCGGCCTGGAACGCCTCCTGACTTCA TTCTCAAGGTGGTGATAGACAAACATCCCGTCCGGTTTTTTGTACACAAGAGGCCCCATG TGGATTTCTTCTTGGAAGTGGTGAGCCAGTGGTACGAGTTGGTCGTGTTCACAGCAAGCA TGGAGATTTACGGCTCTGCCGTGGCAGATAAACTGGACAATAGCAGAAGCATTCTCAAGA GGAGATACTACAGACAGCACTGCACTTTGGAATTGGGCAGCTACATCAAGGACCTCTCTG TGGTCCACAGTGACCTCTCCAGCATTGTGATCCTGGATAACTCCCCAGGGGCTTACAGGA GCCATCCAGACAATGCCATCCCCATCAAATCCTGGTTCAGTGACCCCAGCGATACCGCCC TCCTCAACCTGCTTCCTATGCTGGATGCCCTCAGGTTCACCGCGGATGTTCGTTCTGTGC TGAGTCGAAACCTTCACCAACATAGGCTCTGGTGACAGCTGCTCCCCCTCCACCTGAGTT GGGGTGGGGGGGAAGGGAGGGTGAGCCCTCGGGATGCCGTCTGGTGCCCTGGCCAACGGT GAGGACTGCCTGGGCAGAGTCTGCCCCTCCCACCCCTCTCTGCCCTGGGAGCCCTGCACT CCGTATGGAGTCTGGATGGACACATGGGCCAGATTCTGAAGCAGCCTCACTCTAACTTCG TGTTCGCACTCCCCGGAAACCCCAGACTGGGACATAAAGCGGAGGCCTGGGAGAGCTGAA ACATTGTCTGGTGGAGACAGGACTGGCCAGAGTGAGCGAAAGACACTCGGTAATCCGGGA GGCTCAAAGAGAAGCCAAGCCAGCTTTGTTGTGATTTGATTTTTTAAAAACTCTTGTACA AAACTGATCTAATTCTTCACTCCAAGGGCTGGGCTGTGGGTGGGAAACTGGGATTTTGGG CCACTGGATTTTCCCCAAACTTGTCCCTTCCCTTCCTTTTCCATCTTCCCTTCTTCCTAG AGTCCCTCAGACCTGTAACGAGCTTTCTCTTTTTTTCTTTCGTCTACTTAAACCATGCAT TATAACTTTGAAACCAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGGTGCCGGGGTCATCGGGATGATGCGGACGCAGTGTCTGCTGGGGCTGCGCACGTTCG TGGCCTTCGCCGCCAAGCTCTGGAGCTTCTTCATTTACCTTTTGCGGAGGCAGATCCGCA CGGTAATTCAGTACCAAACCGTTCGATATGATATCCTTCCCTTATCTCCCGTGTCCCGAA ATCGGCTAAGCCAGGTGAAGAGGAAGATCCTGGTGCTGGATCTGGACGAGACGCTTATTC ACTCCCATCATGATGGGGTCCTGAGGCCCACAGTCCGGCCTGGAACGCCTCCTGACTTCA TTCTCAAGGTGGTGATAGACAAACATCCCGTCCGGTTTTTTGTACACAAGAGGCCCCATG TGGATTTCTTCTTGGAAGTGGTGAGCCAGTGGTACGAGTTGGTCGTGTTCACAGCAAGCA TGGAGATTTACGGCTCTGCCGTGGCAGATAAACTGGACAATAGCAGAAGCATTCTCAAGA GGAGATACTACAGACAGCACTGCACTTTGGAATTGGGCAGCTACATCAAGGACCTCTCTG TGGTCCACAGTGACCTCTCCAGCATTGTGATCCTGGATAACTCCCCAGGGGCTTACAGGA GCCATCCAGACAATGCCATCCCCATCAAATCCTGGTTCAGTGACCCCAGCGATACCGCCC TCCTCAACCTGCTTCCTATGCTGGATGCCCTCAGGTTCACCGCGGATGTTCGTTCTGTGC TGAGTCGAAACCTTCACCAACATAGGCTCTGGTGACAGCTGCTCCCCCTCCACCTGAGTT GGGGTGGGGGGGAAGGGAGGGTGAGCCCTCGGGATGCCGTCTGGTGCCCTGGCCAACGGT GAGGACTGCCTGGGCAGAGTCTGCCCCTCCCACCCCTCTCTGCCCTGGGAGCCCTGCACT CCGTATGGAGTCTGGATGGACACATGGGCCAGATTCTGAAGCAGCCTCACTCTAACTTCG TGTTCGCACTCCCCGGAAACCCCAGACTGGGACATAAAGCGGAGGCCTGGGAGAGCTGAA ACATTGTCTGGTGGAGACAGGACTGGCCAGAGTGAGCGAAAGACACTCGGTAATCCGGGA GGCTCAAAGAGAAGCCAAGCCAGCTTTGTTGTGATTTGATTTTTTAAAAACTCTTGTACA AAACTGATCTAATTCTTCACTCCAAGGGCTGGGCTGTGGGTGGGAAACTGGGATTTTGGG CCACTGGATTTTCCCCAAACTTGTCCCTTCCCTTCCTTTTCCATCTTCCCTTCTTCCTAG AGTCCCTCAGACCTGTAACGAGCTTTCTCTTTTTTTCTTTCGTCTACTTAAACCATGCAT TATAACTTTGAAACCAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 692-964, - strand, RNAz p=0.978959 | |
| 1159-1269, + strand, RNAz p=0.916284 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 692-964, - strand, RNAz p=0.978959 | |
| 1159-1269, + strand, RNAz p=0.916284 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_015343, + |
| Aligned organism(s): 96 entry(ies) | More info |
| Aligned organism(s): 96 entry(ies) | Help | Less info |
| 1-124, gnl|bosTau2|chr19 (20505419-20505296) | |
| 1-124, gnl|canFam2|chr5 (35213071-35213211) | |
| 1-124, gnl|danRer3|chr5 (15056397-15056523) | |
| 1-124, gnl|dasNov1|scaffold_78686 (10156-10016) | |
| 1-124, gnl|echTel1|scaffold_304835 (62060-61924) | |
| 1-124, gnl|fr1|chrUn (11685066-11685183) | |
| 1-124, gnl|hg17|chr17 (7095233-7095373) | |
| 1-124, gnl|Hg17|chr17 (7095359-7095236) | |
| 1-124, gnl|loxAfr1|scaffold_111357 (4798-4937) | |
| 1-124, gnl|mm7|chr11 (70063166-70063026) | |
| 1-124, gnl|Mm7|chr11 (70063038-70063161) | |
| 1-124, gnl|monDom2|scaffold_66 (4135547-4135687) | |
| 1-124, gnl|panTro1|chr19_random (44656507-44656367) | |
| 1-124, gnl|rheMac2|chr16 (6981109-6981249) | |
| 1-124, gnl|rn3|chr10 (56839888-56839748) | |
| 1-124, gnl|tetNig1|chrUn_random (46604068-46604183) | |
| 190-310, gnl|bosTau2|chr19 (20502303-20502183) | |
| 190-310, gnl|canFam2|chr5 (35210211-35210341) | |
| 190-310, gnl|canFam2|chr5 (35210322-35210215) | |
| 190-310, gnl|danRer3|chr5 (15053310-15053440) | |
| 190-310, gnl|danRer3|chr5 (15053426-15053314) | |
| 190-310, gnl|dasNov1|scaffold_12124 (6538-6668) | |
| 190-310, gnl|dasNov1|scaffold_32627 (4854-4966) | |
| 190-310, gnl|echTel1|scaffold_302513 (6807-6937) | |
| 190-310, gnl|echTel1|scaffold_304835 (62123-62236) | |
| 190-310, gnl|fr1|chrUn (11682115-11682240) | |
| 190-310, gnl|fr1|chrUn (11682230-11682119) | |
| 190-310, gnl|hg17|chr17 (7091106-7091236) | |
| 190-310, gnl|Hg17|chr17 (7091225-7091105) | |
| 190-310, gnl|hg17|chr5 (72328667-72328780) | |
| 190-310, gnl|loxAfr1|scaffold_111357 (4729-4632) | |
| 190-310, gnl|loxAfr1|scaffold_43377 (38502-38372) | |
| 190-310, gnl|mm7|chr11 (70066111-70065981) | |
| 190-310, gnl|mm7|chr11 (70065994-70066107) | |
| 190-310, gnl|Mm7|chr11 (70065990-70066110) | |
| 190-310, gnl|monDom2|scaffold_66 (4132555-4132686) | |
| 190-310, gnl|monDom2|scaffold_66 (4132672-4132559) | |
| 190-310, gnl|panTro1|chr19_random (44662125-44661995) | |
| 190-310, gnl|panTro1|chr4 (43133416-43133303) | |
| 190-310, gnl|rheMac2|chr16 (6976635-6976765) | |
| 190-310, gnl|rheMac2|chr6 (69154543-69154656) | |
| 190-310, gnl|rn3|chr10 (56842698-56842568) | |
| 190-310, gnl|rn3|chr10 (56842581-56842694) | |
| 190-310, gnl|tetNig1|chrUn_random (46601405-46601520) | |
| 190-310, gnl|tetNig1|chrUn_random (46601520-46601409) | |
| 190-310, gnl|xenTro1|scaffold_6106 (722-592) | |
| 495-609, gnl|bosTau2|chr19 (20501147-20501033) | |
| 495-609, gnl|canFam2|chr5 (35209038-35209162) | |
| 495-609, gnl|canFam2|chr5 (35209154-35209045) | |
| 495-609, gnl|canFam2|chr5 (35209154-35209045) | |
| 495-609, gnl|danRer3|chr5 (15050788-15050906) | |
| 495-609, gnl|danRer3|chr5 (15050903-15050797) | |
| 495-609, gnl|danRer3|chr5 (15050903-15050797) | |
| 495-609, gnl|dasNov1|scaffold_12124 (5345-5469) | |
| 495-609, gnl|dasNov1|scaffold_32627 (5157-5266) | |
| 495-609, gnl|dasNov1|scaffold_32627 (5157-5266) | |
| 495-609, gnl|echTel1|scaffold_302513 (5668-5792) | |
| 495-609, gnl|echTel1|scaffold_304835 (62428-62533) | |
| 495-609, gnl|echTel1|scaffold_304835 (62428-62533) | |
| 495-609, gnl|fr1|chrUn (11681535-11681659) | |
| 495-609, gnl|fr1|chrUn (11681651-11681545) | |
| 495-609, gnl|fr1|chrUn (11681651-11681545) | |
| 495-609, gnl|hg17|chr17 (7090065-7090189) | |
| 495-609, gnl|Hg17|chr17 (7090183-7090069) | |
| 495-609, gnl|hg17|chr3 (115087312-115087421) | |
| 495-609, gnl|hg17|chr5 (72328972-72329081) | |
| 495-609, gnl|loxAfr1|scaffold_111357 (4347-4442) | |
| 495-609, gnl|loxAfr1|scaffold_111357 (4442-4349) | |
| 495-609, gnl|loxAfr1|scaffold_111357 (4442-4349) | |
| 495-609, gnl|mm7|chr11 (70070519-70070396) | |
| 495-609, gnl|mm7|chr11 (70070403-70070512) | |
| 495-609, gnl|mm7|chr11 (70070403-70070512) | |
| 495-609, gnl|Mm7|chr11 (70070399-70070513) | |
| 495-609, gnl|monDom2|scaffold_66 (4131324-4131448) | |
| 495-609, gnl|monDom2|scaffold_66 (4131440-4131331) | |
| 495-609, gnl|monDom2|scaffold_66 (4131440-4131331) | |
| 495-609, gnl|oryCun1|scaffold_191535 (16435-16559) | |
| 495-609, gnl|oryCun1|scaffold_191535 (16551-16442) | |
| 495-609, gnl|oryCun1|scaffold_191535 (16551-16442) | |
| 495-609, gnl|panTro1|chr19_random (44663166-44663042) | |
| 495-609, gnl|panTro1|chr19_random (44663050-44663159) | |
| 495-609, gnl|panTro1|chr19_random (44663050-44663159) | |
| 495-609, gnl|rheMac2|chr16 (6975599-6975723) | |
| 495-609, gnl|rheMac2|chr6 (69154849-69154958) | |
| 495-609, gnl|rheMac2|chr6 (69154849-69154958) | |
| 495-609, gnl|rn3|chr10 (56847433-56847308) | |
| 495-609, gnl|rn3|chr10 (56847317-56847426) | |
| 495-609, gnl|rn3|chr10 (56847317-56847426) | |
| 495-609, gnl|tetNig1|chrUn_random (46600851-46600975) | |
| 495-609, gnl|tetNig1|chrUn_random (46600967-46600861) | |
| 495-609, gnl|tetNig1|chrUn_random (46600967-46600861) | |
| 495-609, gnl|xenTro1|scaffold_6106 (3321-3198) | |
| 495-609, gnl|xenTro1|scaffold_6106 (3219-3315) | |
| 692-1338, gnl|bosTau2|chr19 (20500247-20499596) | |
| 692-1338, gnl|Hg17|chr17 (7088291-7087634) | |
| 692-1338, gnl|Mm7|chr11 (70071548-70072175) |
| Aligned organism(s): 96 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-124, gnl|bosTau2|chr19 (20505419-20505296) | |
| 1-124, gnl|canFam2|chr5 (35213071-35213211) | |
| 1-124, gnl|danRer3|chr5 (15056397-15056523) | |
| 1-124, gnl|dasNov1|scaffold_78686 (10156-10016) | |
| 1-124, gnl|echTel1|scaffold_304835 (62060-61924) | |
| 1-124, gnl|fr1|chrUn (11685066-11685183) | |
| 1-124, gnl|hg17|chr17 (7095233-7095373) | |
| 1-124, gnl|Hg17|chr17 (7095359-7095236) | |
| 1-124, gnl|loxAfr1|scaffold_111357 (4798-4937) | |
| 1-124, gnl|mm7|chr11 (70063166-70063026) | |
| 1-124, gnl|Mm7|chr11 (70063038-70063161) | |
| 1-124, gnl|monDom2|scaffold_66 (4135547-4135687) | |
| 1-124, gnl|panTro1|chr19_random (44656507-44656367) | |
| 1-124, gnl|rheMac2|chr16 (6981109-6981249) | |
| 1-124, gnl|rn3|chr10 (56839888-56839748) | |
| 1-124, gnl|tetNig1|chrUn_random (46604068-46604183) | |
| 190-310, gnl|bosTau2|chr19 (20502303-20502183) | |
| 190-310, gnl|canFam2|chr5 (35210211-35210341) | |
| 190-310, gnl|canFam2|chr5 (35210322-35210215) | |
| 190-310, gnl|danRer3|chr5 (15053310-15053440) | |
| 190-310, gnl|danRer3|chr5 (15053426-15053314) | |
| 190-310, gnl|dasNov1|scaffold_12124 (6538-6668) | |
| 190-310, gnl|dasNov1|scaffold_32627 (4854-4966) | |
| 190-310, gnl|echTel1|scaffold_302513 (6807-6937) | |
| 190-310, gnl|echTel1|scaffold_304835 (62123-62236) | |
| 190-310, gnl|fr1|chrUn (11682115-11682240) | |
| 190-310, gnl|fr1|chrUn (11682230-11682119) | |
| 190-310, gnl|hg17|chr17 (7091106-7091236) | |
| 190-310, gnl|Hg17|chr17 (7091225-7091105) | |
| 190-310, gnl|hg17|chr5 (72328667-72328780) | |
| 190-310, gnl|loxAfr1|scaffold_111357 (4729-4632) | |
| 190-310, gnl|loxAfr1|scaffold_43377 (38502-38372) | |
| 190-310, gnl|mm7|chr11 (70066111-70065981) | |
| 190-310, gnl|mm7|chr11 (70065994-70066107) | |
| 190-310, gnl|Mm7|chr11 (70065990-70066110) | |
| 190-310, gnl|monDom2|scaffold_66 (4132555-4132686) | |
| 190-310, gnl|monDom2|scaffold_66 (4132672-4132559) | |
| 190-310, gnl|panTro1|chr19_random (44662125-44661995) | |
| 190-310, gnl|panTro1|chr4 (43133416-43133303) | |
| 190-310, gnl|rheMac2|chr16 (6976635-6976765) | |
| 190-310, gnl|rheMac2|chr6 (69154543-69154656) | |
| 190-310, gnl|rn3|chr10 (56842698-56842568) | |
| 190-310, gnl|rn3|chr10 (56842581-56842694) | |
| 190-310, gnl|tetNig1|chrUn_random (46601405-46601520) | |
| 190-310, gnl|tetNig1|chrUn_random (46601520-46601409) | |
| 190-310, gnl|xenTro1|scaffold_6106 (722-592) | |
| 495-609, gnl|bosTau2|chr19 (20501147-20501033) | |
| 495-609, gnl|canFam2|chr5 (35209038-35209162) | |
| 495-609, gnl|canFam2|chr5 (35209154-35209045) | |
| 495-609, gnl|canFam2|chr5 (35209154-35209045) | |
| 495-609, gnl|danRer3|chr5 (15050788-15050906) | |
| 495-609, gnl|danRer3|chr5 (15050903-15050797) | |
| 495-609, gnl|danRer3|chr5 (15050903-15050797) | |
| 495-609, gnl|dasNov1|scaffold_12124 (5345-5469) | |
| 495-609, gnl|dasNov1|scaffold_32627 (5157-5266) | |
| 495-609, gnl|dasNov1|scaffold_32627 (5157-5266) | |
| 495-609, gnl|echTel1|scaffold_302513 (5668-5792) | |
| 495-609, gnl|echTel1|scaffold_304835 (62428-62533) | |
| 495-609, gnl|echTel1|scaffold_304835 (62428-62533) | |
| 495-609, gnl|fr1|chrUn (11681535-11681659) | |
| 495-609, gnl|fr1|chrUn (11681651-11681545) | |
| 495-609, gnl|fr1|chrUn (11681651-11681545) | |
| 495-609, gnl|hg17|chr17 (7090065-7090189) | |
| 495-609, gnl|Hg17|chr17 (7090183-7090069) | |
| 495-609, gnl|hg17|chr3 (115087312-115087421) | |
| 495-609, gnl|hg17|chr5 (72328972-72329081) | |
| 495-609, gnl|loxAfr1|scaffold_111357 (4347-4442) | |
| 495-609, gnl|loxAfr1|scaffold_111357 (4442-4349) | |
| 495-609, gnl|loxAfr1|scaffold_111357 (4442-4349) | |
| 495-609, gnl|mm7|chr11 (70070519-70070396) | |
| 495-609, gnl|mm7|chr11 (70070403-70070512) | |
| 495-609, gnl|mm7|chr11 (70070403-70070512) | |
| 495-609, gnl|Mm7|chr11 (70070399-70070513) | |
| 495-609, gnl|monDom2|scaffold_66 (4131324-4131448) | |
| 495-609, gnl|monDom2|scaffold_66 (4131440-4131331) | |
| 495-609, gnl|monDom2|scaffold_66 (4131440-4131331) | |
| 495-609, gnl|oryCun1|scaffold_191535 (16435-16559) | |
| 495-609, gnl|oryCun1|scaffold_191535 (16551-16442) | |
| 495-609, gnl|oryCun1|scaffold_191535 (16551-16442) | |
| 495-609, gnl|panTro1|chr19_random (44663166-44663042) | |
| 495-609, gnl|panTro1|chr19_random (44663050-44663159) | |
| 495-609, gnl|panTro1|chr19_random (44663050-44663159) | |
| 495-609, gnl|rheMac2|chr16 (6975599-6975723) | |
| 495-609, gnl|rheMac2|chr6 (69154849-69154958) | |
| 495-609, gnl|rheMac2|chr6 (69154849-69154958) | |
| 495-609, gnl|rn3|chr10 (56847433-56847308) | |
| 495-609, gnl|rn3|chr10 (56847317-56847426) | |
| 495-609, gnl|rn3|chr10 (56847317-56847426) | |
| 495-609, gnl|tetNig1|chrUn_random (46600851-46600975) | |
| 495-609, gnl|tetNig1|chrUn_random (46600967-46600861) | |
| 495-609, gnl|tetNig1|chrUn_random (46600967-46600861) | |
| 495-609, gnl|xenTro1|scaffold_6106 (3321-3198) | |
| 495-609, gnl|xenTro1|scaffold_6106 (3219-3315) | |
| 692-1338, gnl|bosTau2|chr19 (20500247-20499596) | |
| 692-1338, gnl|Hg17|chr17 (7088291-7087634) | |
| 692-1338, gnl|Mm7|chr11 (70071548-70072175) |
| Expressed library(ies): 25 entry(ies) | More info |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
| che (0.545256) | |
| nms (0.427716) | |
| amn (0.417711) | |
| elu (0.385356) | |
| csp (0.322373) | |
| cly (0.241284) | |
| mas (0.210305) | |
| hea (0.204499) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cje (0.165235) | |
| nco (0.161734) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| kid (0.129735) | |
| med (0.116252) |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| che (0.545256) | |
| nms (0.427716) | |
| amn (0.417711) | |
| elu (0.385356) | |
| csp (0.322373) | |
| cly (0.241284) | |
| mas (0.210305) | |
| hea (0.204499) | |
| fli (0.202881) | |
| fcc (0.197785) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| nje (0.16592) | |
| cje (0.165235) | |
| nco (0.161734) | |
| cag (0.151194) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| kid (0.129735) | |
| med (0.116252) |