Non-Coding RNA Search

Ss1.1-Pig2-106P05.5

Sequence:


               
               TTACAGCGCTGCCAGTTGGCCCTGCAGAATGTCCGTGATGAGGCGGACAGTGGTGAAGTC
TCTTTGAAATCCTTGGAGCCTGCGGTTTTGAAACAAGGAGAAGAAATCCACAACGAGGTC
GAGTTTGAGTGGCTGAGACAGTTTTGGTTTCAAGGCAATCGATACAAAAAGTGCACCGAT
TGGTGGTGTCAACCCATGACTCAGCTGGAAGAGCTTTGGAAGAAGATGGAAGGTGCGACC
CATGCTGTGCTTCGTGAAGTTAGAAGAGAGGGGGCCCCTGTGGAACAGAGCAGTGACATC
CTGACTGCCATCCTAGCCGTGCTCACCACTCGCCAGAACCTGAGGAGGGAGTGGCATGCC
AGGTGCCAGTCCCGAATTGCCCGAACTCTGCCTGTGGACCAGAAGCCAGAATGCCGGCCG
TATTGGGAAAAGGATGATCCCTCCATGCCTCTGCCGTTTGATCTCACAGACACTGTGGCT
GAACTCAGAGGTCTGCTTCTGGAAGCCAAACCCTAGAGAAAGAGCCCAAGTCTCAGGTGG
AGGAGGAAAGGGTATGTTTTGGCTTCTCTCCTCCAACCTTGTCCGGGGCTTAGGCAAGGG
CAGTGTGGGTAGACTCGGCCTTGAGATTACAGAACATGAGACCCAGTGGCAAACAGCTAG
CACACGGGGCCCGTGAATACTCAAATGCTTAAAGAGTGACCCAGTGTGACAGTGATTTGG
TATTAAATGAGAAATCTCCCCGCAAACTCTTCCCCACTTAGTTTTTAAATGGGAGGCACT
CTGCTTGCAAGGCCTGGGAAGCCTGTGGTGGCACCTAACCTACTTTCCTCCTTCTCAGGC
CTTTTCAGAGACTTGGCAGGGAGTCACTGAAGGGAAGTCCGAACTCAGACGTTTAGCCCA
TTTTTTTCAACCACACCCTTTAGAGGCTATGCAGTCCAATATGGCAGCCACTAGGTAGAT
GTGGCTTCTTGAATTTAAATTCAATTTTAATTATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTACAGCGCTGCCAGTTGGCCCTGCAGAATGTCCGTGATGAGGCGGACAGTGGTGAAGTC
TCTTTGAAATCCTTGGAGCCTGCGGTTTTGAAACAAGGAGAAGAAATCCACAACGAGGTC
GAGTTTGAGTGGCTGAGACAGTTTTGGTTTCAAGGCAATCGATACAAAAAGTGCACCGAT
TGGTGGTGTCAACCCATGACTCAGCTGGAAGAGCTTTGGAAGAAGATGGAAGGTGCGACC
CATGCTGTGCTTCGTGAAGTTAGAAGAGAGGGGGCCCCTGTGGAACAGAGCAGTGACATC
CTGACTGCCATCCTAGCCGTGCTCACCACTCGCCAGAACCTGAGGAGGGAGTGGCATGCC
AGGTGCCAGTCCCGAATTGCCCGAACTCTGCCTGTGGACCAGAAGCCAGAATGCCGGCCG
TATTGGGAAAAGGATGATCCCTCCATGCCTCTGCCGTTTGATCTCACAGACACTGTGGCT
GAACTCAGAGGTCTGCTTCTGGAAGCCAAACCCTAGAGAAAGAGCCCAAGTCTCAGGTGG
AGGAGGAAAGGGTATGTTTTGGCTTCTCTCCTCCAACCTTGTCCGGGGCTTAGGCAAGGG
CAGTGTGGGTAGACTCGGCCTTGAGATTACAGAACATGAGACCCAGTGGCAAACAGCTAG
CACACGGGGCCCGTGAATACTCAAATGCTTAAAGAGTGACCCAGTGTGACAGTGATTTGG
TATTAAATGAGAAATCTCCCCGCAAACTCTTCCCCACTTAGTTTTTAAATGGGAGGCACT
CTGCTTGCAAGGCCTGGGAAGCCTGTGGTGGCACCTAACCTACTTTCCTCCTTCTCAGGC
CTTTTCAGAGACTTGGCAGGGAGTCACTGAAGGGAAGTCCGAACTCAGACGTTTAGCCCA
TTTTTTTCAACCACACCCTTTAGAGGCTATGCAGTCCAATATGGCAGCCACTAGGTAGAT
GTGGCTTCTTGAATTTAAATTCAATTTTAATTATAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57043067|ref|XP_535301.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57043067|ref|XP_535301.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               438-634, + strand, RNAz p=0.979047

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               438-634, + strand, RNAz p=0.979047

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC003583, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC003583, +

Aligned organism(s): 22 entry(ies)

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Aligned organism(s): 22 entry(ies)

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               1-119, gnl|bosTau2|chr18 (19905147-19905029)
               

               
               1-119, gnl|canFam2|chr2 (64786106-64785960)
               

               
               1-119, gnl|echTel1|scaffold_294036 (145265-145114)
               

               
               1-119, gnl|galGal2|chr11 (4707612-4707462)
               

               
               1-119, gnl|hg17|chr16 (52471256-52471413)
               

               
               1-119, gnl|Hg17|chr16 (52471284-52471402)
               

               
               1-119, gnl|mm7|chr8 (90066877-90067028)
               

               
               1-119, gnl|Mm7|chr8 (90066905-90067023)
               

               
               1-119, gnl|monDom2|scaffold_35 (19653579-19653732)
               

               
               1-119, gnl|oryCun1|scaffold_204011 (200526-200369)
               

               
               1-119, gnl|panTro1|chr18 (46507198-46507355)
               

               
               1-119, gnl|rheMac2|chr20 (52115422-52115578)
               

               
               1-119, gnl|rn3|chr19 (16713151-16712998)
               


               
               359-634, gnl|bosTau2|chr18 (19662726-19662451)
               

               
               359-634, gnl|Hg17|chr16 (52703171-52703441)
               

               
               359-634, gnl|Mm7|chr8 (90258847-90259109)
               


               
               412-626, gnl|bosTau2|chr11 (74856194-74856403)
               

               
               412-626, gnl|Hg17|chr16 (52703232-52703433)
               

               
               412-626, gnl|Mm7|chr8 (90258900-90259101)
               


               
               801-996, gnl|bosTau2|chr18 (19662203-19661999)
               

               
               801-996, gnl|Hg17|chr16 (52703625-52703814)
               

               
               801-996, gnl|Mm7|chr8 (90259302-90259495)

Aligned organism(s): 22 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-119, gnl|bosTau2|chr18 (19905147-19905029)
               

               
               1-119, gnl|canFam2|chr2 (64786106-64785960)
               

               
               1-119, gnl|echTel1|scaffold_294036 (145265-145114)
               

               
               1-119, gnl|galGal2|chr11 (4707612-4707462)
               

               
               1-119, gnl|hg17|chr16 (52471256-52471413)
               

               
               1-119, gnl|Hg17|chr16 (52471284-52471402)
               

               
               1-119, gnl|mm7|chr8 (90066877-90067028)
               

               
               1-119, gnl|Mm7|chr8 (90066905-90067023)
               

               
               1-119, gnl|monDom2|scaffold_35 (19653579-19653732)
               

               
               1-119, gnl|oryCun1|scaffold_204011 (200526-200369)
               

               
               1-119, gnl|panTro1|chr18 (46507198-46507355)
               

               
               1-119, gnl|rheMac2|chr20 (52115422-52115578)
               

               
               1-119, gnl|rn3|chr19 (16713151-16712998)
               


               
               359-634, gnl|bosTau2|chr18 (19662726-19662451)
               

               
               359-634, gnl|Hg17|chr16 (52703171-52703441)
               

               
               359-634, gnl|Mm7|chr8 (90258847-90259109)
               


               
               412-626, gnl|bosTau2|chr11 (74856194-74856403)
               

               
               412-626, gnl|Hg17|chr16 (52703232-52703433)
               

               
               412-626, gnl|Mm7|chr8 (90258900-90259101)
               


               
               801-996, gnl|bosTau2|chr18 (19662203-19661999)
               

               
               801-996, gnl|Hg17|chr16 (52703625-52703814)
               

               
               801-996, gnl|Mm7|chr8 (90259302-90259495)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cty (0.20816)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               ute (0.132784)
               

               
               ebs (0.118301)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.20816)
               

               
               fhi (0.169578)
               

               
               hyp (0.142837)
               

               
               ute (0.132784)
               

               
               ebs (0.118301)

	1-119, gnl\|bosTau2\|chr18 (19905147-19905029)
	1-119, gnl\|canFam2\|chr2 (64786106-64785960)
	1-119, gnl\|echTel1\|scaffold_294036 (145265-145114)
	1-119, gnl\|galGal2\|chr11 (4707612-4707462)
	1-119, gnl\|hg17\|chr16 (52471256-52471413)
	1-119, gnl\|Hg17\|chr16 (52471284-52471402)
	1-119, gnl\|mm7\|chr8 (90066877-90067028)
	1-119, gnl\|Mm7\|chr8 (90066905-90067023)
	1-119, gnl\|monDom2\|scaffold_35 (19653579-19653732)
	1-119, gnl\|oryCun1\|scaffold_204011 (200526-200369)
	1-119, gnl\|panTro1\|chr18 (46507198-46507355)
	1-119, gnl\|rheMac2\|chr20 (52115422-52115578)
	1-119, gnl\|rn3\|chr19 (16713151-16712998)

	359-634, gnl\|bosTau2\|chr18 (19662726-19662451)
	359-634, gnl\|Hg17\|chr16 (52703171-52703441)
	359-634, gnl\|Mm7\|chr8 (90258847-90259109)

	412-626, gnl\|bosTau2\|chr11 (74856194-74856403)
	412-626, gnl\|Hg17\|chr16 (52703232-52703433)
	412-626, gnl\|Mm7\|chr8 (90258900-90259101)

	801-996, gnl\|bosTau2\|chr18 (19662203-19661999)
	801-996, gnl\|Hg17\|chr16 (52703625-52703814)
	801-996, gnl\|Mm7\|chr8 (90259302-90259495)

	cty (0.20816)
	fhi (0.169578)
	hyp (0.142837)
	ute (0.132784)
	ebs (0.118301)