Non-Coding RNA Search

Ss1.1-Pig2-107E04.5

Sequence:


               
               CTGACTCTGGCCGCTTGCCTTCCATTCCTGAGAATAGGAACTTAACGGAGCTGGTGGTGG
CGGTGACCGACGAGAACATCGTGGGGCTGTTCGCCGCGCTCTTAGCGGAGCGAAGAGTCC
TGCTCATCTCCAGCAAGCTGAGCACCTTGACATCGTGTGTCCACGCGTCCTGCGCCCTTC
TGTACCCCATGCACTGGGAGCACGTGCTCATCCCAACGCTGCCACCGCATCTGCTGGACT
ACTGCTGCGCGCCCATGCCCTACCTCATCGGAGTGCATGCCAGTCTTGCCGAGAGAGTGC
GGGAGAAAGGCCTGGAGGATGTCGTGATGATGAACGTGGACTCCAATACCTTGGAGACGC
CTTTCGATGATGTGCAGGCGCTGCCCCCAGACGTGGTGTCCCTGCTGAGGCTGAGGCTAA
GGAAGGTCGCACTGGCCCCAGGGGAAGGAGTGTCCCGTCTCTTCCTCAAAGCCCAGGCCC
TGCTCTTCGGGGGCTACCGCGATGCACTTGTTTGCAGCCCGGGCCAGCCTGTAACCTTTG
ATGAAAAAGCCTTCTTGGCCCAGAAACCCGGGGCACCCCTGCAGGCCTTCCACCAGCGGG
CTGTGCACCTGCAGCTGTTCAAACAGTTCATCGAAGGCCGACTGGAGAAGCTTAACAAAG
GAGAAGGTTTCTCAGACCTCTTTGAGCAGGAGATCACCTGCAGTTGCGCCTCATCAGGCA
CCCTTCGCTCCTACCAGCTCTGGGCAGACAACCTGAAGAAAGGTGGTGGTGCCCTCCTGC
ATTCTGTCAAGGCCAAGACCCAGCCAGCTGTCAGGAACATGTACCGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGACTCTGGCCGCTTGCCTTCCATTCCTGAGAATAGGAACTTAACGGAGCTGGTGGTGG
CGGTGACCGACGAGAACATCGTGGGGCTGTTCGCCGCGCTCTTAGCGGAGCGAAGAGTCC
TGCTCATCTCCAGCAAGCTGAGCACCTTGACATCGTGTGTCCACGCGTCCTGCGCCCTTC
TGTACCCCATGCACTGGGAGCACGTGCTCATCCCAACGCTGCCACCGCATCTGCTGGACT
ACTGCTGCGCGCCCATGCCCTACCTCATCGGAGTGCATGCCAGTCTTGCCGAGAGAGTGC
GGGAGAAAGGCCTGGAGGATGTCGTGATGATGAACGTGGACTCCAATACCTTGGAGACGC
CTTTCGATGATGTGCAGGCGCTGCCCCCAGACGTGGTGTCCCTGCTGAGGCTGAGGCTAA
GGAAGGTCGCACTGGCCCCAGGGGAAGGAGTGTCCCGTCTCTTCCTCAAAGCCCAGGCCC
TGCTCTTCGGGGGCTACCGCGATGCACTTGTTTGCAGCCCGGGCCAGCCTGTAACCTTTG
ATGAAAAAGCCTTCTTGGCCCAGAAACCCGGGGCACCCCTGCAGGCCTTCCACCAGCGGG
CTGTGCACCTGCAGCTGTTCAAACAGTTCATCGAAGGCCGACTGGAGAAGCTTAACAAAG
GAGAAGGTTTCTCAGACCTCTTTGAGCAGGAGATCACCTGCAGTTGCGCCTCATCAGGCA
CCCTTCGCTCCTACCAGCTCTGGGCAGACAACCTGAAGAAAGGTGGTGGTGCCCTCCTGC
ATTCTGTCAAGGCCAAGACCCAGCCAGCTGTCAGGAACATGTACCGCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               Q6P3S1_HUMAN

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               Q6P3S1_HUMAN

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               36-150, + strand, RNAz p=0.846876

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               36-150, + strand, RNAz p=0.846876

Aligned organism(s): 15 entry(ies)

More info

Aligned organism(s): 15 entry(ies)

Help | Less info


               
               36-150, gnl|bosTau2|chr7 (13908844-13908958)
               

               
               36-150, gnl|canFam2|chr20 (56656884-56656766)
               

               
               36-150, gnl|fr1|chrUn (86537278-86537160)
               

               
               36-150, gnl|hg17|chr19 (6427864-6427982)
               

               
               36-150, gnl|Hg17|chr19 (6427978-6427864)
               

               
               36-150, gnl|loxAfr1|scaffold_63012 (2343-2461)
               

               
               36-150, gnl|mm7|chr17 (55285028-55285146)
               

               
               36-150, gnl|Mm7|chr17 (55285142-55285028)
               

               
               36-150, gnl|monDom2|scaffold_85 (4852024-4852142)
               

               
               36-150, gnl|rheMac2|chr19 (6385571-6385689)
               

               
               36-150, gnl|rn3|chr13 (52427645-52427527)
               

               
               36-150, gnl|tetNig1|chrUn_random (60738121-60738239)
               


               
               395-522, gnl|bosTau2|chr7 (13910326-13910453)
               

               
               395-522, gnl|Hg17|chr19 (6426411-6426284)
               

               
               395-522, gnl|Mm7|chr17 (55282851-55282724)

Aligned organism(s): 15 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               36-150, gnl|bosTau2|chr7 (13908844-13908958)
               

               
               36-150, gnl|canFam2|chr20 (56656884-56656766)
               

               
               36-150, gnl|fr1|chrUn (86537278-86537160)
               

               
               36-150, gnl|hg17|chr19 (6427864-6427982)
               

               
               36-150, gnl|Hg17|chr19 (6427978-6427864)
               

               
               36-150, gnl|loxAfr1|scaffold_63012 (2343-2461)
               

               
               36-150, gnl|mm7|chr17 (55285028-55285146)
               

               
               36-150, gnl|Mm7|chr17 (55285142-55285028)
               

               
               36-150, gnl|monDom2|scaffold_85 (4852024-4852142)
               

               
               36-150, gnl|rheMac2|chr19 (6385571-6385689)
               

               
               36-150, gnl|rn3|chr13 (52427645-52427527)
               

               
               36-150, gnl|tetNig1|chrUn_random (60738121-60738239)
               


               
               395-522, gnl|bosTau2|chr7 (13910326-13910453)
               

               
               395-522, gnl|Hg17|chr19 (6426411-6426284)
               

               
               395-522, gnl|Mm7|chr17 (55282851-55282724)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

Help | Less info


               
               hyp (0.142837)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.142837)
               

               
               cty (0.10408)

	36-150, gnl\|bosTau2\|chr7 (13908844-13908958)
	36-150, gnl\|canFam2\|chr20 (56656884-56656766)
	36-150, gnl\|fr1\|chrUn (86537278-86537160)
	36-150, gnl\|hg17\|chr19 (6427864-6427982)
	36-150, gnl\|Hg17\|chr19 (6427978-6427864)
	36-150, gnl\|loxAfr1\|scaffold_63012 (2343-2461)
	36-150, gnl\|mm7\|chr17 (55285028-55285146)
	36-150, gnl\|Mm7\|chr17 (55285142-55285028)
	36-150, gnl\|monDom2\|scaffold_85 (4852024-4852142)
	36-150, gnl\|rheMac2\|chr19 (6385571-6385689)
	36-150, gnl\|rn3\|chr13 (52427645-52427527)
	36-150, gnl\|tetNig1\|chrUn_random (60738121-60738239)

	395-522, gnl\|bosTau2\|chr7 (13910326-13910453)
	395-522, gnl\|Hg17\|chr19 (6426411-6426284)
	395-522, gnl\|Mm7\|chr17 (55282851-55282724)