Non-Coding RNA Search

Ss1.1-Pig2-107F23.5

Sequence:


               
               CGGCCTCGGCCTGCGGTCCGGCGCTCCTGCGCCCGGGAGCGCTGGCTCCTCTGGCGCCGA
GAAATGGACCAATTTTGACAAGATGTAGTGCTGCAGTGTGCCTGATGGAATACATTCAGT
CATGGCATCCGAACTTTGTAAGACGATCTCTGTGGCAAGGCTGGAAAAGCACAAGAATTT
GTTCTTAAATTATAGGAATCTGCAGCATTTCCCGTTGGAGTTACTGAAAGATGAGGGACT
ACAGTACTTGGAGAGACTTTATATGAAAAGGAACTCCCTTACAACCTTGCCAGAAAACCT
TGCTCAGAAGCTTCCAAACCTTGTGGAACTGTATCTGCACTCAAATAACATAGTTGTGGT
TCCGGAAGCAATTGGGTCCCTTATAAAGCTACAGTGTTTGGATCTTAGTGACAATGCCTT
AGAAATTGTTTGCCCAGAAATTGGTCGTCTGAGAGCTTTACGTCATCTTCGACTAGCTAA
TAACCAACTGCAATTCCTACCTCCAGAGGTTGGCGATTTGAAGGAGCTGCAGACACTAGA
CATTTCTACCAATCGTTTGCTAGCTTTACCCGAGAGGCTTCACCTGTGCCTTTCTCTGCA
GTACCTCACTGTGGACCGAAATCGTCTATGGTGTGTTCCGCGCCATCTCTGCCAGCTGCC
CAGCCTCAATGAGCTCTCCATGGCTGGAAACCGTCTTGCATTTTTGCCACTTGATTTAGG
TCGATCTCGAGAACTACAATATGTGTACGTGGATAACAACATTCACCTAAAAGGCTTGCC
ATCCTATCTGTACAACAAAGTCATCGGGTGCAGTGGCTGTGGTGCTCCCATTCAAGTTTC
TGAGGTGAAGCTGCTTTCCTTCTCATCAGGGCCACTAACTGTTTTCCTCCCTGCTGAAGT
GAAGGCCATAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCCTCGGCCTGCGGTCCGGCGCTCCTGCGCCCGGGAGCGCTGGCTCCTCTGGCGCCGA
GAAATGGACCAATTTTGACAAGATGTAGTGCTGCAGTGTGCCTGATGGAATACATTCAGT
CATGGCATCCGAACTTTGTAAGACGATCTCTGTGGCAAGGCTGGAAAAGCACAAGAATTT
GTTCTTAAATTATAGGAATCTGCAGCATTTCCCGTTGGAGTTACTGAAAGATGAGGGACT
ACAGTACTTGGAGAGACTTTATATGAAAAGGAACTCCCTTACAACCTTGCCAGAAAACCT
TGCTCAGAAGCTTCCAAACCTTGTGGAACTGTATCTGCACTCAAATAACATAGTTGTGGT
TCCGGAAGCAATTGGGTCCCTTATAAAGCTACAGTGTTTGGATCTTAGTGACAATGCCTT
AGAAATTGTTTGCCCAGAAATTGGTCGTCTGAGAGCTTTACGTCATCTTCGACTAGCTAA
TAACCAACTGCAATTCCTACCTCCAGAGGTTGGCGATTTGAAGGAGCTGCAGACACTAGA
CATTTCTACCAATCGTTTGCTAGCTTTACCCGAGAGGCTTCACCTGTGCCTTTCTCTGCA
GTACCTCACTGTGGACCGAAATCGTCTATGGTGTGTTCCGCGCCATCTCTGCCAGCTGCC
CAGCCTCAATGAGCTCTCCATGGCTGGAAACCGTCTTGCATTTTTGCCACTTGATTTAGG
TCGATCTCGAGAACTACAATATGTGTACGTGGATAACAACATTCACCTAAAAGGCTTGCC
ATCCTATCTGTACAACAAAGTCATCGGGTGCAGTGGCTGTGGTGCTCCCATTCAAGTTTC
TGAGGTGAAGCTGCTTTCCTTCTCATCAGGGCCACTAACTGTTTTCCTCCCTGCTGAAGT
GAAGGCCATAGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8C1S3_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8C1S3_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               505-623, - strand, RNAz p=0.920799

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               505-623, - strand, RNAz p=0.920799

Aligned organism(s): 20 entry(ies)

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Aligned organism(s): 20 entry(ies)

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               60-289, gnl|bosTau2|chr21 (4108361-4108590)
               

               
               60-289, gnl|Hg17|chr15 (97613622-97613853)
               

               
               60-289, gnl|Mm7|chr7 (63497323-63497083)
               


               
               505-713, gnl|bosTau2|chr21 (4212807-4213015)
               

               
               505-713, gnl|canFam2|chr3 (44255090-44254836)
               

               
               505-713, gnl|danRer3|chr25 (3871174-3871397)
               

               
               505-713, gnl|dasNov1|scaffold_16138 (21517-21264)
               

               
               505-713, gnl|fr1|chrUn (121941167-121940935)
               

               
               505-713, gnl|galGal2|chr10 (17567395-17567650)
               

               
               505-713, gnl|hg17|chr15 (97691640-97691886)
               

               
               505-713, gnl|Hg17|chr15 (97691649-97691857)
               

               
               505-713, gnl|loxAfr1|scaffold_9742 (57572-57318)
               

               
               505-713, gnl|mm7|chr7 (63416056-63415805)
               

               
               505-713, gnl|Mm7|chr7 (63416045-63415837)
               

               
               505-713, gnl|monDom2|scaffold_12 (61520230-61519983)
               

               
               505-713, gnl|panTro1|chr16 (98761982-98762228)
               

               
               505-713, gnl|rheMac2|chr7 (79365335-79365581)
               

               
               505-713, gnl|rn3|chr1 (122386448-122386197)
               

               
               505-713, gnl|tetNig1|chrUn_random (136959677-136959891)
               

               
               505-713, gnl|xenTro1|scaffold_208 (1659932-1659675)

Aligned organism(s): 20 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               60-289, gnl|bosTau2|chr21 (4108361-4108590)
               

               
               60-289, gnl|Hg17|chr15 (97613622-97613853)
               

               
               60-289, gnl|Mm7|chr7 (63497323-63497083)
               


               
               505-713, gnl|bosTau2|chr21 (4212807-4213015)
               

               
               505-713, gnl|canFam2|chr3 (44255090-44254836)
               

               
               505-713, gnl|danRer3|chr25 (3871174-3871397)
               

               
               505-713, gnl|dasNov1|scaffold_16138 (21517-21264)
               

               
               505-713, gnl|fr1|chrUn (121941167-121940935)
               

               
               505-713, gnl|galGal2|chr10 (17567395-17567650)
               

               
               505-713, gnl|hg17|chr15 (97691640-97691886)
               

               
               505-713, gnl|Hg17|chr15 (97691649-97691857)
               

               
               505-713, gnl|loxAfr1|scaffold_9742 (57572-57318)
               

               
               505-713, gnl|mm7|chr7 (63416056-63415805)
               

               
               505-713, gnl|Mm7|chr7 (63416045-63415837)
               

               
               505-713, gnl|monDom2|scaffold_12 (61520230-61519983)
               

               
               505-713, gnl|panTro1|chr16 (98761982-98762228)
               

               
               505-713, gnl|rheMac2|chr7 (79365335-79365581)
               

               
               505-713, gnl|rn3|chr1 (122386448-122386197)
               

               
               505-713, gnl|tetNig1|chrUn_random (136959677-136959891)
               

               
               505-713, gnl|xenTro1|scaffold_208 (1659932-1659675)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               fce (0.271592)
               

               
               hea (0.204499)
               

               
               spl (0.143184)
               

               
               pla (0.133672)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               hea (0.204499)
               

               
               spl (0.143184)
               

               
               pla (0.133672)

	60-289, gnl\|bosTau2\|chr21 (4108361-4108590)
	60-289, gnl\|Hg17\|chr15 (97613622-97613853)
	60-289, gnl\|Mm7\|chr7 (63497323-63497083)

	505-713, gnl\|bosTau2\|chr21 (4212807-4213015)
	505-713, gnl\|canFam2\|chr3 (44255090-44254836)
	505-713, gnl\|danRer3\|chr25 (3871174-3871397)
	505-713, gnl\|dasNov1\|scaffold_16138 (21517-21264)
	505-713, gnl\|fr1\|chrUn (121941167-121940935)
	505-713, gnl\|galGal2\|chr10 (17567395-17567650)
	505-713, gnl\|hg17\|chr15 (97691640-97691886)
	505-713, gnl\|Hg17\|chr15 (97691649-97691857)
	505-713, gnl\|loxAfr1\|scaffold_9742 (57572-57318)
	505-713, gnl\|mm7\|chr7 (63416056-63415805)
	505-713, gnl\|Mm7\|chr7 (63416045-63415837)
	505-713, gnl\|monDom2\|scaffold_12 (61520230-61519983)
	505-713, gnl\|panTro1\|chr16 (98761982-98762228)
	505-713, gnl\|rheMac2\|chr7 (79365335-79365581)
	505-713, gnl\|rn3\|chr1 (122386448-122386197)
	505-713, gnl\|tetNig1\|chrUn_random (136959677-136959891)
	505-713, gnl\|xenTro1\|scaffold_208 (1659932-1659675)