Non-Coding RNA Search

Ss1.1-Pig2-107I09.5

Sequence:


               
               GAGCCCTGGGAGAGGTTTATTGATGGAATGAGATTCAAACACCAAGCATCAGCAATTAGC
ACTGGAGTTCTCCCAAGACTCTGAGCAAAAACACTGAAGTATCACAATGCAGCATCATTT
ACTCACATAGGACAGTCACCAAGTTCATAGCAGAACTTCACAACTCAAGATATTATCTCG
GATCTAGATTCTAGGTGAATATTCTCAATATGAAGATGAGAAAATTGAGGTTCACAAAGT
AGGAAGTGACATAACTGCCCAGCTAGTTAAATGGAGCTAGAGGTCTGAGTCTCCCAACCA
CTGATTCTTCTACACCACACCACGTGGCCTCCATTCTTTAGATGGTAAGTTGACAATCCA
CTTAAATCAGAAATTAAGACAAAAGAATGTGTGTGATTATCTTCTCTCATTTAACCTACT
TGGTTTCACCATTTCATTTTAGCATCATGTTAAAGAATGTTATATCAGTGTAAGATGAGG
AACCAAGTTCTTTATAGAATAACGATGAACCAAAAGATCAAAGAGTAGGAGAACAGTGAA
TGTTAAGTTATTAAAGAAATGAGCAAGAAGCATGTGTCAGGGAAAATAAACGCTTCTTAT
GCTGGTATAACTATGGAGCCCTCCCCCACACAGCGGATACACTCATTTCAGAAATGCCAT
TTCATGCGGAGAGACTCACACTGAAGGTCCTACTCCTCTCCAGACAGATGAGAAGACCTC
TTGCTCTTTGTAAGATGCTTCAACCCTTAGGACTCAGACTCACATCTCTTGCGAGAGGCA
GCCTCAGCAGCTCTTAGAAACAAGCTGCCAGACTGATAAGGCCATGGAGGCCTGAAGGAA
GCCAGCATGCTGGACTGAGGAACATGTGCATAATCCCTGCCTTCTTGGTGAACAAGGACG
ACCATCTTTTTCTTTTGTAGAGATAATCGTGTGTATATTGTGACTGTAGTTTGTGAAGAA
AATGCAATGATTTGCTTCGACAGCTCCCCAAATATCCCTGTTAAGTATGAATGTGCCTGC
CTCATTGCCTCCTGTGCCAAACACAGTACTGAATGCGTTGTTTTTAAATAAACTGTTTTA
TCATGCATTAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCCCTGGGAGAGGTTTATTGATGGAATGAGATTCAAACACCAAGCATCAGCAATTAGC
ACTGGAGTTCTCCCAAGACTCTGAGCAAAAACACTGAAGTATCACAATGCAGCATCATTT
ACTCACATAGGACAGTCACCAAGTTCATAGCAGAACTTCACAACTCAAGATATTATCTCG
GATCTAGATTCTAGGTGAATATTCTCAATATGAAGATGAGAAAATTGAGGTTCACAAAGT
AGGAAGTGACATAACTGCCCAGCTAGTTAAATGGAGCTAGAGGTCTGAGTCTCCCAACCA
CTGATTCTTCTACACCACACCACGTGGCCTCCATTCTTTAGATGGTAAGTTGACAATCCA
CTTAAATCAGAAATTAAGACAAAAGAATGTGTGTGATTATCTTCTCTCATTTAACCTACT
TGGTTTCACCATTTCATTTTAGCATCATGTTAAAGAATGTTATATCAGTGTAAGATGAGG
AACCAAGTTCTTTATAGAATAACGATGAACCAAAAGATCAAAGAGTAGGAGAACAGTGAA
TGTTAAGTTATTAAAGAAATGAGCAAGAAGCATGTGTCAGGGAAAATAAACGCTTCTTAT
GCTGGTATAACTATGGAGCCCTCCCCCACACAGCGGATACACTCATTTCAGAAATGCCAT
TTCATGCGGAGAGACTCACACTGAAGGTCCTACTCCTCTCCAGACAGATGAGAAGACCTC
TTGCTCTTTGTAAGATGCTTCAACCCTTAGGACTCAGACTCACATCTCTTGCGAGAGGCA
GCCTCAGCAGCTCTTAGAAACAAGCTGCCAGACTGATAAGGCCATGGAGGCCTGAAGGAA
GCCAGCATGCTGGACTGAGGAACATGTGCATAATCCCTGCCTTCTTGGTGAACAAGGACG
ACCATCTTTTTCTTTTGTAGAGATAATCGTGTGTATATTGTGACTGTAGTTTGTGAAGAA
AATGCAATGATTTGCTTCGACAGCTCCCCAAATATCCCTGTTAAGTATGAATGTGCCTGC
CTCATTGCCTCCTGTGCCAAACACAGTACTGAATGCGTTGTTTTTAAATAAACTGTTTTA
TCATGCATTAGA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               1-238, - strand, RNAz p=0.992706
               

               
               688-846, - strand, RNAz p=0.859852

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-238, - strand, RNAz p=0.992706
               

               
               688-846, - strand, RNAz p=0.859852

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-1092, gnl|bosTau2|chr24 (43313363-43312260)
               

               
               1-1092, gnl|Hg17|chr18 (53186065-53187157)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1092, gnl|bosTau2|chr24 (43313363-43312260)
               

               
               1-1092, gnl|Hg17|chr18 (53186065-53187157)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               fcc (0.39557)
               

               
               ece (0.229305)
               

               
               hyp (0.142837)
               

               
               cbr (0.127975)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.39557)
               

               
               ece (0.229305)
               

               
               hyp (0.142837)
               

               
               cbr (0.127975)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

	1-238, - strand, RNAz p=0.992706
	688-846, - strand, RNAz p=0.859852

	1-1092, gnl\|bosTau2\|chr24 (43313363-43312260)
	1-1092, gnl\|Hg17\|chr18 (53186065-53187157)

	fcc (0.39557)
	ece (0.229305)
	hyp (0.142837)
	cbr (0.127975)
	pgl (0.118483)
	ebs (0.118301)