Non-Coding RNA Search

Ss1.1-Pig2-107K04.5

Sequence:


               
               GGTGAAAAAAAAATTTCATATTTGGCTTTTTGCTGTATGTATCTTAGTAGTGAAAAGTTA
TATGAGGAGAAATTCTTTCTCCCTTTTTTGGTCCCTTTTCTTTTTTTGTGTGTGGTGTTT
AAATCATATTCTAGATAGAAGTTATTTAGTCCCAGTTTGTGTATCTGATTTACGCATAGA
TATGATTCATATCTGTACTTTTAAATCATAAATTTTAATTTTATTAACCTTTAAAATTTG
TTAGCATGTGGTCTGTTACACATGCTAAAAAATCTTGTTAGTGTAAACACATCATGGAGG
AGAAAAATAGAAATTAAAATTACTAATTGGGCCACGGAAATTATTTATTTTGTTAAATGC
AAAAGAAGGGAAACTTATAAGATGGCTCTATTTACAACTACTTTATTTTAAAGTTTTATT
TGCACATACTTACTTTGAGCTCTTGTTTTCAGAGGAGGTATTTTTTCTCATAAGGTAATT
TGTCATAAATTCTCTTCTGTGCACTTCAAAATGGTTTAGTGCTATCCTTTTAATCAGATT
TTTGAAGGAAAAAAATCATTCCATATAACAAAATATATGTACAAATAAGATGACAGTCTC
ATTTGATCAAATTAGAATTATAAAACTTGACATCTTAATGAATTGTGGTTTATATCTTCC
ACATAACACCACAGACACACCAAAAGTTTTTTTTATTATTTCAGATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTGAAAAAAAAATTTCATATTTGGCTTTTTGCTGTATGTATCTTAGTAGTGAAAAGTTA
TATGAGGAGAAATTCTTTCTCCCTTTTTTGGTCCCTTTTCTTTTTTTGTGTGTGGTGTTT
AAATCATATTCTAGATAGAAGTTATTTAGTCCCAGTTTGTGTATCTGATTTACGCATAGA
TATGATTCATATCTGTACTTTTAAATCATAAATTTTAATTTTATTAACCTTTAAAATTTG
TTAGCATGTGGTCTGTTACACATGCTAAAAAATCTTGTTAGTGTAAACACATCATGGAGG
AGAAAAATAGAAATTAAAATTACTAATTGGGCCACGGAAATTATTTATTTTGTTAAATGC
AAAAGAAGGGAAACTTATAAGATGGCTCTATTTACAACTACTTTATTTTAAAGTTTTATT
TGCACATACTTACTTTGAGCTCTTGTTTTCAGAGGAGGTATTTTTTCTCATAAGGTAATT
TGTCATAAATTCTCTTCTGTGCACTTCAAAATGGTTTAGTGCTATCCTTTTAATCAGATT
TTTGAAGGAAAAAAATCATTCCATATAACAAAATATATGTACAAATAAGATGACAGTCTC
ATTTGATCAAATTAGAATTATAAAACTTGACATCTTAATGAATTGTGGTTTATATCTTCC
ACATAACACCACAGACACACCAAAAGTTTTTTTTATTATTTCAGATGA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               151-335, + strand, RNAz p=0.997713

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               151-335, + strand, RNAz p=0.997713

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC041379, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC041379, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-708, gnl|bosTau2|chr17 (6933235-6933980)
               

               
               1-708, gnl|Hg17|chr8 (125394281-125393579)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-708, gnl|bosTau2|chr17 (6933235-6933980)
               

               
               1-708, gnl|Hg17|chr8 (125394281-125393579)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               vin (0.332557)
               

               
               kid (0.259471)
               

               
               fcc (0.197785)
               

               
               nje (0.16592)
               

               
               tbr (0.154178)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               kid (0.259471)
               

               
               fcc (0.197785)
               

               
               nje (0.16592)
               

               
               tbr (0.154178)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)

	1-708, gnl\|bosTau2\|chr17 (6933235-6933980)
	1-708, gnl\|Hg17\|chr8 (125394281-125393579)

	vin (0.332557)
	kid (0.259471)
	fcc (0.197785)
	nje (0.16592)
	tbr (0.154178)
	ese (0.126502)
	ebs (0.118301)