Non-Coding RNA Search

Ss1.1-Pig2-107L12.5

Sequence:


               
               CCCATGAACAGGCTCTGGCTGAACTGACCAAGAGGCTGGGGGCCTTGGAGGAGCCTGACG
TGACTGGCCAACTCGTCGACCTGCCTGAGTATTACAGCTGGGGGGAGGAACTGACAGAGA
CCCGGAGCCTGATCCAGCGACGCATCATGGAATCTGTGAATGGGCTGAAGTCTCTCTCCG
TGGGAAGGGTGGTGGTTGTGAAGAGTCGGGAGCATCACAACGCACTGGGTGTGATCCTTC
AGGTCTCCTCAACCTCCACCAGCAGGGTGTTCACAACTCTGGTCTTGTGTGACAAGCCCA
TGTCTGAGGACCCACAGCAGAAGGGGCCGGCCTCACCAGACGTGCCCTACCCAGACGACC
TCGTGGGGTTCAAGCTCTTCCTGCCTGAAGGGCCCTGCGACCACACCGTGGCCAAGCTCC
AGCCGGGGGATGTGGCTGCCATCACCACCAAGGTGCTCCGGGTGAATGGGGAGAAGATCC
TGGAGGACTTCAGCAAGAGGCAGCAGCCGAAATTCAAGAAGGATCCTCCCTCTGCGGCTG
TGACAACGGCTGTCCAGGAACTGCTCCGTCTGGCTCAGGCCCACCTGGCAGGACCTCCTA
CCCTTGACCCTGTCAATGACCTGCAGCTCAAGGATGTGTCAGTGGTAGAGGGGGGGCTCC
GGGCCCGGAAGCTGGAGGAGCTGATCCGGGGGGCTCAGTGTGTGCACAGCCCTCGTTTCC
CTGCCCAGTACGTGAAGCTGCGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCATGAACAGGCTCTGGCTGAACTGACCAAGAGGCTGGGGGCCTTGGAGGAGCCTGACG
TGACTGGCCAACTCGTCGACCTGCCTGAGTATTACAGCTGGGGGGAGGAACTGACAGAGA
CCCGGAGCCTGATCCAGCGACGCATCATGGAATCTGTGAATGGGCTGAAGTCTCTCTCCG
TGGGAAGGGTGGTGGTTGTGAAGAGTCGGGAGCATCACAACGCACTGGGTGTGATCCTTC
AGGTCTCCTCAACCTCCACCAGCAGGGTGTTCACAACTCTGGTCTTGTGTGACAAGCCCA
TGTCTGAGGACCCACAGCAGAAGGGGCCGGCCTCACCAGACGTGCCCTACCCAGACGACC
TCGTGGGGTTCAAGCTCTTCCTGCCTGAAGGGCCCTGCGACCACACCGTGGCCAAGCTCC
AGCCGGGGGATGTGGCTGCCATCACCACCAAGGTGCTCCGGGTGAATGGGGAGAAGATCC
TGGAGGACTTCAGCAAGAGGCAGCAGCCGAAATTCAAGAAGGATCCTCCCTCTGCGGCTG
TGACAACGGCTGTCCAGGAACTGCTCCGTCTGGCTCAGGCCCACCTGGCAGGACCTCCTA
CCCTTGACCCTGTCAATGACCTGCAGCTCAAGGATGTGTCAGTGGTAGAGGGGGGGCTCC
GGGCCCGGAAGCTGGAGGAGCTGATCCGGGGGGCTCAGTGTGTGCACAGCCCTCGTTTCC
CTGCCCAGTACGTGAAGCTGCGGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57209507|emb|CAI41732.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57209507|emb|CAI41732.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-137, gnl|bosTau2|chr23 (23791339-23791203)
               

               
               1-137, gnl|Hg17|chr6 (32042761-32042897)
               

               
               1-137, gnl|Mm7|chr17 (32937928-32937792)
               


               
               234-391, gnl|bosTau2|chr23 (23559229-23559386)
               

               
               234-391, gnl|Hg17|chr6 (32043462-32043619)
               

               
               234-391, gnl|Mm7|chr17 (32937348-32937188)
               


               
               514-728, gnl|bosTau2|chr23 (23559720-23559934)
               

               
               514-728, gnl|Hg17|chr6 (32044080-32044294)
               

               
               514-728, gnl|Mm7|chr17 (32936845-32936631)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-137, gnl|bosTau2|chr23 (23791339-23791203)
               

               
               1-137, gnl|Hg17|chr6 (32042761-32042897)
               

               
               1-137, gnl|Mm7|chr17 (32937928-32937792)
               


               
               234-391, gnl|bosTau2|chr23 (23559229-23559386)
               

               
               234-391, gnl|Hg17|chr6 (32043462-32043619)
               

               
               234-391, gnl|Mm7|chr17 (32937348-32937188)
               


               
               514-728, gnl|bosTau2|chr23 (23559720-23559934)
               

               
               514-728, gnl|Hg17|chr6 (32044080-32044294)
               

               
               514-728, gnl|Mm7|chr17 (32936845-32936631)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ebs (0.118301)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ebs (0.118301)

	1-137, gnl\|bosTau2\|chr23 (23791339-23791203)
	1-137, gnl\|Hg17\|chr6 (32042761-32042897)
	1-137, gnl\|Mm7\|chr17 (32937928-32937792)

	234-391, gnl\|bosTau2\|chr23 (23559229-23559386)
	234-391, gnl\|Hg17\|chr6 (32043462-32043619)
	234-391, gnl\|Mm7\|chr17 (32937348-32937188)

	514-728, gnl\|bosTau2\|chr23 (23559720-23559934)
	514-728, gnl\|Hg17\|chr6 (32044080-32044294)
	514-728, gnl\|Mm7\|chr17 (32936845-32936631)