Non-Coding RNA Search

Ss1.1-Pig2-107M22.5

Sequence:


               
               CAGGCTGGGAAGGCCAGACTCCCGCAGCCTGAGGGCTGCCCCTCCAAGCTCTACCGGCTG
ATGCAGCGCTGCTGGGCCCTCAGCCCCAAGGACCGGCCCTCCTTCAGCGAGATCGCCAAC
GCCCTGGGAGACAGCTCTGCGGACAGCAAGCCGTGAGGAGAGAGCCCAGGCAGGCTGTGC
CTCAGGATGGCGTGGGCAGAGGAGGACCTCCTGAGGGGTGCCCGCAGCATGATGGGCAAG
AATCCCGTCCTCCCGGGCCCCAGGGGCCCCGCCCTGGCACCGCAGGCACTGCTGAGGTCT
GGCAGGGCCTGGGCTTTCTCCTTTTTCCTCACCCTCTGCCCTCGGGGAGGTGGATTCAGA
CCCAGACTGGGTGACTGGGGCCTCGGGCTGAGCAGCTTTCTCTGCCACCCTTTTCCCCAT
CAGGGACAGTGTGGGTGCCTCAGGTAACTCCAGTTTCTGGCCTGGGTCTCCTCCCCATGA
CCAGGTCCAGTTCGCCACTCACCTGCCAACTTCATCCAGGGCGGGCTAGGCTGGAGGTGA
GCTGGGTTGGGTATAGGTCCTTAATCTACTCAAGTTCCTGGATCGTTCTGGCCCACGGGG
CCCACTCTGGGATCTGCACTAGGATCACGGAGGACCCAGCCAGTGCGTCCTCCGTGCGTG
GACTTGTACCCTCCCACTCCGACCCAGACCCATGCCCCCTCCCTACCCTTCTCTCCTTTT
CTCATCCTAAGTGCCTGGCAGATGAAGGAGTTTTCAGGAGCTTTTGACACTATATAACCC
GCCCCTTTTGTATGCACCGCGGGGCGGCTTTTGTATGTAATTGCAGCGTGGGGTGGGAGG
GCCTGGGAGGTAGGGGTGGGTCCTGGAGGAGATGGGAGAGTGGGCCGCCTCTGCCTCACA
CCTTTATTGATGTTCTTGTTGTTTGTTTTTGGGTTTTGTTTTTTTTTTTTGGTTTTTTTT
TTTTTTACACTCGCTGCTCTCAATAAAGAAGCCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGCTGGGAAGGCCAGACTCCCGCAGCCTGAGGGCTGCCCCTCCAAGCTCTACCGGCTG
ATGCAGCGCTGCTGGGCCCTCAGCCCCAAGGACCGGCCCTCCTTCAGCGAGATCGCCAAC
GCCCTGGGAGACAGCTCTGCGGACAGCAAGCCGTGAGGAGAGAGCCCAGGCAGGCTGTGC
CTCAGGATGGCGTGGGCAGAGGAGGACCTCCTGAGGGGTGCCCGCAGCATGATGGGCAAG
AATCCCGTCCTCCCGGGCCCCAGGGGCCCCGCCCTGGCACCGCAGGCACTGCTGAGGTCT
GGCAGGGCCTGGGCTTTCTCCTTTTTCCTCACCCTCTGCCCTCGGGGAGGTGGATTCAGA
CCCAGACTGGGTGACTGGGGCCTCGGGCTGAGCAGCTTTCTCTGCCACCCTTTTCCCCAT
CAGGGACAGTGTGGGTGCCTCAGGTAACTCCAGTTTCTGGCCTGGGTCTCCTCCCCATGA
CCAGGTCCAGTTCGCCACTCACCTGCCAACTTCATCCAGGGCGGGCTAGGCTGGAGGTGA
GCTGGGTTGGGTATAGGTCCTTAATCTACTCAAGTTCCTGGATCGTTCTGGCCCACGGGG
CCCACTCTGGGATCTGCACTAGGATCACGGAGGACCCAGCCAGTGCGTCCTCCGTGCGTG
GACTTGTACCCTCCCACTCCGACCCAGACCCATGCCCCCTCCCTACCCTTCTCTCCTTTT
CTCATCCTAAGTGCCTGGCAGATGAAGGAGTTTTCAGGAGCTTTTGACACTATATAACCC
GCCCCTTTTGTATGCACCGCGGGGCGGCTTTTGTATGTAATTGCAGCGTGGGGTGGGAGG
GCCTGGGAGGTAGGGGTGGGTCCTGGAGGAGATGGGAGAGTGGGCCGCCTCTGCCTCACA
CCTTTATTGATGTTCTTGTTGTTTGTTTTTGGGTTTTGTTTTTTTTTTTTGGTTTTTTTT
TTTTTTACACTCGCTGCTCTCAATAAAGAAGCCTTT

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               120-514, - strand, RNAz p=0.961965
               

               
               577-710, - strand, RNAz p=0.967831
               

               
               788-903, + strand, RNAz p=0.946744

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-514, - strand, RNAz p=0.961965
               

               
               577-710, - strand, RNAz p=0.967831
               

               
               788-903, + strand, RNAz p=0.946744

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               890-961, + strand, RNAmicro p=0.994658
               

               
               26-124, - strand, RNAmicro p=0.923569

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               890-961, + strand, RNAmicro p=0.994658
               

               
               26-124, - strand, RNAmicro p=0.923569

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_152881, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_152881, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-918, gnl|bosTau2|chr23 (13176527-13177452)
               

               
               1-918, gnl|Hg17|chr6 (43236442-43237437)
               

               
               1-918, gnl|Mm7|chr17 (44694222-44693306)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-918, gnl|bosTau2|chr23 (13176527-13177452)
               

               
               1-918, gnl|Hg17|chr6 (43236442-43237437)
               

               
               1-918, gnl|Mm7|chr17 (44694222-44693306)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               elu (0.385356)
               

               
               csp (0.322373)
               

               
               ese (0.253004)
               

               
               nep (0.183925)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               csp (0.322373)
               

               
               ese (0.253004)
               

               
               nep (0.183925)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	120-514, - strand, RNAz p=0.961965
	577-710, - strand, RNAz p=0.967831
	788-903, + strand, RNAz p=0.946744

	890-961, + strand, RNAmicro p=0.994658
	26-124, - strand, RNAmicro p=0.923569

	1-918, gnl\|bosTau2\|chr23 (13176527-13177452)
	1-918, gnl\|Hg17\|chr6 (43236442-43237437)
	1-918, gnl\|Mm7\|chr17 (44694222-44693306)

	elu (0.385356)
	csp (0.322373)
	ese (0.253004)
	nep (0.183925)
	nmm (0.132802)
	ute (0.132784)
	eru (0.120048)
	ebs (0.118301)
	ecc (0.115035)