Non-Coding RNA Search

Ss1.1-Pig2-108B18.5

Sequence:


               
               AGATCAGCATGCAGGTGGCGCAGGCCAAGGGGCTGCCCAGCCTCAAGCACCACCTGCTGC
CTCGCACCAAGGGCTTTGCGGTCACCGTGAGGAGTTTGAGAAATGTAGTTTCAGCTGTAT
ATGACTGTACACTCAATTTCAGAAATAATGAAAACCCAACACTGCTGGGAGTCCTAAATG
GAAAGAAATATCACGCAGATTTATACGTTAGGCGGATTCCTTTAGAAGAGGTCCCCGAAG
ACGAGGACAAGTGCTCGGCCTGGCTGCACAAGCTCTACCAGGAGAAGGACGCCTTCCAGG
AGGAGTACTGCCGCACGGGCACCTTCCCCGAGACGCCCATGGTGCCCCCGCGCCGGCCCT
GGACGCTGGTCAACTGGCTCTTCTGGGCCTCGCTGCTGCTCTACCCGTTCGTCCGCTTCC
TCGTCAACATGGTCAGCAGCGGCTCCTCCCTGACGCTGGCCGGCTTCGTCCTCGTCTTCT
TTGTGGCTTCCATGGGGGTCCGATGGATGATCGGCGTCACAGAAATTGACAAGGGCTCCG
CCTACGGCAACATGGACAGCAAGCAGAAACACAGCGACTGACCCGGGACGCGTCACCATC
CAAAGGGGACCTTGGGGGACTGGTGGACACTGCCAGCATCCTTGGTGGGACCCAGTGACA
AGGCTGGGGGAGCCCCGCTAGGGAGGCAGGGGCTTGGTCCTCGAGCCAGGAGGGGTGAAA
TACGTGTTTAAATCCTTTTCCCCCATGTGCTTTAGTGGGCTTCGGTTCTCCTTCTTTCCG
CGTGAGTTTGTGCCTGTGTGCGTGTGTGTGAGAGAAAGGACACATGTGAGTGTGCCAGGC
GGTGCGTGTGATCACTGAGAGGGCATCTGAGGTGCAGGGGGAGGGCGGAGACGGGGAGCT
CGGGGGGAGTTTCCGTTCATCCTTTGGTGCTGAGTTTCTGTAACCCTGGATGGCCAGAGC
GTGAAAGGCACTTTAGGTAAGATGACTAAATTAAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGATCAGCATGCAGGTGGCGCAGGCCAAGGGGCTGCCCAGCCTCAAGCACCACCTGCTGC
CTCGCACCAAGGGCTTTGCGGTCACCGTGAGGAGTTTGAGAAATGTAGTTTCAGCTGTAT
ATGACTGTACACTCAATTTCAGAAATAATGAAAACCCAACACTGCTGGGAGTCCTAAATG
GAAAGAAATATCACGCAGATTTATACGTTAGGCGGATTCCTTTAGAAGAGGTCCCCGAAG
ACGAGGACAAGTGCTCGGCCTGGCTGCACAAGCTCTACCAGGAGAAGGACGCCTTCCAGG
AGGAGTACTGCCGCACGGGCACCTTCCCCGAGACGCCCATGGTGCCCCCGCGCCGGCCCT
GGACGCTGGTCAACTGGCTCTTCTGGGCCTCGCTGCTGCTCTACCCGTTCGTCCGCTTCC
TCGTCAACATGGTCAGCAGCGGCTCCTCCCTGACGCTGGCCGGCTTCGTCCTCGTCTTCT
TTGTGGCTTCCATGGGGGTCCGATGGATGATCGGCGTCACAGAAATTGACAAGGGCTCCG
CCTACGGCAACATGGACAGCAAGCAGAAACACAGCGACTGACCCGGGACGCGTCACCATC
CAAAGGGGACCTTGGGGGACTGGTGGACACTGCCAGCATCCTTGGTGGGACCCAGTGACA
AGGCTGGGGGAGCCCCGCTAGGGAGGCAGGGGCTTGGTCCTCGAGCCAGGAGGGGTGAAA
TACGTGTTTAAATCCTTTTCCCCCATGTGCTTTAGTGGGCTTCGGTTCTCCTTCTTTCCG
CGTGAGTTTGTGCCTGTGTGCGTGTGTGTGAGAGAAAGGACACATGTGAGTGTGCCAGGC
GGTGCGTGTGATCACTGAGAGGGCATCTGAGGTGCAGGGGGAGGGCGGAGACGGGGAGCT
CGGGGGGAGTTTCCGTTCATCCTTTGGTGCTGAGTTTCTGTAACCCTGGATGGCCAGAGC
GTGAAAGGCACTTTAGGTAAGATGACTAAATTAAGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61868058|ref|XP_597370.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61868058|ref|XP_597370.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               1-108, + strand, RNAz p=0.623033
               

               
               604-695, + strand, RNAz p=0.860055
               

               
               605-716, - strand, RNAz p=0.68956

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-108, + strand, RNAz p=0.623033
               

               
               604-695, + strand, RNAz p=0.860055
               

               
               605-716, - strand, RNAz p=0.68956

Homologous human UTR: 3 entry(ies)

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Homologous human UTR: 3 entry(ies)

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               5' of AJ227890, +
               

               
               5' of NM_020133, +
               

               
               5' of NM_020133, -

Homologous human UTR: 3 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AJ227890, +
               

               
               5' of NM_020133, +
               

               
               5' of NM_020133, -

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-108, gnl|bosTau2|chr9 (58931169-58931062)
               

               
               1-108, gnl|Hg17|chr6 (161544896-161544789)
               

               
               1-108, gnl|Mm7|chr17 (10928147-10928254)
               


               
               486-996, gnl|bosTau2|chr9 (58917697-58917178)
               

               
               486-996, gnl|canFam2|chr1 (52753782-52754149)
               

               
               486-996, gnl|dasNov1|scaffold_4849 (68177-68501)
               

               
               486-996, gnl|echTel1|scaffold_296952 (142006-141615)
               

               
               486-996, gnl|hg17|chr6 (161527502-161527863)
               

               
               486-996, gnl|Hg17|chr6 (161528078-161527554)
               

               
               486-996, gnl|loxAfr1|scaffold_109944 (1227-1606)
               

               
               486-996, gnl|mm7|chr17 (10937122-10936659)
               

               
               486-996, gnl|Mm7|chr17 (10936446-10937065)
               

               
               486-996, gnl|monDom2|scaffold_0 (42450622-42450257)
               

               
               486-996, gnl|oryCun1|scaffold_98265 (12938-13214)
               

               
               486-996, gnl|panTro1|chr5 (165404089-165404452)
               

               
               486-996, gnl|rheMac2|chr4 (157949693-157950067)
               

               
               486-996, gnl|rn3|chr1 (42989739-42990147)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-108, gnl|bosTau2|chr9 (58931169-58931062)
               

               
               1-108, gnl|Hg17|chr6 (161544896-161544789)
               

               
               1-108, gnl|Mm7|chr17 (10928147-10928254)
               


               
               486-996, gnl|bosTau2|chr9 (58917697-58917178)
               

               
               486-996, gnl|canFam2|chr1 (52753782-52754149)
               

               
               486-996, gnl|dasNov1|scaffold_4849 (68177-68501)
               

               
               486-996, gnl|echTel1|scaffold_296952 (142006-141615)
               

               
               486-996, gnl|hg17|chr6 (161527502-161527863)
               

               
               486-996, gnl|Hg17|chr6 (161528078-161527554)
               

               
               486-996, gnl|loxAfr1|scaffold_109944 (1227-1606)
               

               
               486-996, gnl|mm7|chr17 (10937122-10936659)
               

               
               486-996, gnl|Mm7|chr17 (10936446-10937065)
               

               
               486-996, gnl|monDom2|scaffold_0 (42450622-42450257)
               

               
               486-996, gnl|oryCun1|scaffold_98265 (12938-13214)
               

               
               486-996, gnl|panTro1|chr5 (165404089-165404452)
               

               
               486-996, gnl|rheMac2|chr4 (157949693-157950067)
               

               
               486-996, gnl|rn3|chr1 (42989739-42990147)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               hyp (0.285673)
               

               
               ebs (0.236602)
               

               
               fli (0.202881)
               

               
               cut (0.169924)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.285673)
               

               
               ebs (0.236602)
               

               
               fli (0.202881)
               

               
               cut (0.169924)

	1-108, + strand, RNAz p=0.623033
	604-695, + strand, RNAz p=0.860055
	605-716, - strand, RNAz p=0.68956

	1-108, gnl\|bosTau2\|chr9 (58931169-58931062)
	1-108, gnl\|Hg17\|chr6 (161544896-161544789)
	1-108, gnl\|Mm7\|chr17 (10928147-10928254)

	486-996, gnl\|bosTau2\|chr9 (58917697-58917178)
	486-996, gnl\|canFam2\|chr1 (52753782-52754149)
	486-996, gnl\|dasNov1\|scaffold_4849 (68177-68501)
	486-996, gnl\|echTel1\|scaffold_296952 (142006-141615)
	486-996, gnl\|hg17\|chr6 (161527502-161527863)
	486-996, gnl\|Hg17\|chr6 (161528078-161527554)
	486-996, gnl\|loxAfr1\|scaffold_109944 (1227-1606)
	486-996, gnl\|mm7\|chr17 (10937122-10936659)
	486-996, gnl\|Mm7\|chr17 (10936446-10937065)
	486-996, gnl\|monDom2\|scaffold_0 (42450622-42450257)
	486-996, gnl\|oryCun1\|scaffold_98265 (12938-13214)
	486-996, gnl\|panTro1\|chr5 (165404089-165404452)
	486-996, gnl\|rheMac2\|chr4 (157949693-157950067)
	486-996, gnl\|rn3\|chr1 (42989739-42990147)