Ss1.1-Pig2-108B24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCAAACCCGAATCCCCACACTGCCGCTTACGAAAGAGCAGAGCCATGGCGGCTCCCTGGG GACACAATCTTTGCAAGATCCTGGGNGAAAACAGTTACGAGGTTGGTAGGAGCAGTCCTA GTTCGTCAAGAACCTCGAAGGAGTCTCTTCTACCTGAGAGCCGTGAAGCAAGCACCGGCC TTGCCAGCCTGCAGGTTACCCAGGTTCCTGGAGCGTCCTCGGAAATCTCCAAGAAAGCCC CAAGTTCAGACTCCCTCTATCCAGTGACACACCCAGTGGCTGCCTCTGGGAAAGTGGAAG TGGACTCCAAAGAGCAGTCCTCCTCTTTCAGTTTTAAAGATCAAAAGGAAGCTGGTCATC TGACCCAGAGCAGTAATTCAAGTGCCGCCCCAGGCACAAGTCCAGGAAATCTCACTACCT CGAGAGCCCCTTGTTTCTCATCTCCAAATGCGGTCTCCTTGGGTCCCGATCCGGCAGGTC GGGCCCTGGGTGACCAGAACAGTGCTGGAGGCCAAGGGAAGAAGCTCTTTGGCTCCCAGA ACGAGGCTGCAGCCCTTCAGTGCCCCAGGCCTGTGGAGCCAGCGCCACTGCCTGCTGATG CCCCTCCCACTTTTCCCAGTAGGAAGTTGGCTCCAAGCAAGAACTCCGTGTCTGGTGGGG TACAGACTGCCAGGGAAGACTGGGCTCCAAAGCCACCGCCTGCCTCTTTTGACAGAATCA AGAGTGAGAAGATTTTTGGTGGGGGGCCTCTCAAGGCAAACGCAGAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCAAACCCGAATCCCCACACTGCCGCTTACGAAAGAGCAGAGCCATGGCGGCTCCCTGGG GACACAATCTTTGCAAGATCCTGGGNGAAAACAGTTACGAGGTTGGTAGGAGCAGTCCTA GTTCGTCAAGAACCTCGAAGGAGTCTCTTCTACCTGAGAGCCGTGAAGCAAGCACCGGCC TTGCCAGCCTGCAGGTTACCCAGGTTCCTGGAGCGTCCTCGGAAATCTCCAAGAAAGCCC CAAGTTCAGACTCCCTCTATCCAGTGACACACCCAGTGGCTGCCTCTGGGAAAGTGGAAG TGGACTCCAAAGAGCAGTCCTCCTCTTTCAGTTTTAAAGATCAAAAGGAAGCTGGTCATC TGACCCAGAGCAGTAATTCAAGTGCCGCCCCAGGCACAAGTCCAGGAAATCTCACTACCT CGAGAGCCCCTTGTTTCTCATCTCCAAATGCGGTCTCCTTGGGTCCCGATCCGGCAGGTC GGGCCCTGGGTGACCAGAACAGTGCTGGAGGCCAAGGGAAGAAGCTCTTTGGCTCCCAGA ACGAGGCTGCAGCCCTTCAGTGCCCCAGGCCTGTGGAGCCAGCGCCACTGCCTGCTGATG CCCCTCCCACTTTTCCCAGTAGGAAGTTGGCTCCAAGCAAGAACTCCGTGTCTGGTGGGG TACAGACTGCCAGGGAAGACTGGGCTCCAAAGCCACCGCCTGCCTCTTTTGACAGAATCA AGAGTGAGAAGATTTTTGGTGGGGGGCCTCTCAAGGCAAACGCAGAGA |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 141-416, + strand, RNAz p=0.975164 | |
| 649-768, - strand, RNAz p=0.903244 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 141-416, + strand, RNAz p=0.975164 | |
| 649-768, - strand, RNAz p=0.903244 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 1-118, gnl|bosTau2|chr13 (42759427-42759310) | |
| 1-118, gnl|canFam2|chr24 (24772688-24773234) | |
| 1-118, gnl|danRer3|chrUn (43751042-43750508) | |
| 1-118, gnl|dasNov1|scaffold_18239 (5014-5560) | |
| 1-118, gnl|echTel1|scaffold_281889 (7957-8485) | |
| 1-118, gnl|galGal2|chr20 (9737825-9738410) | |
| 1-118, gnl|hg17|chr20 (30487555-30488098) | |
| 1-118, gnl|Hg17|chr20 (30487562-30487676) | |
| 1-118, gnl|loxAfr1|scaffold_21892 (45935-46481) | |
| 1-118, gnl|mm7|chr2 (153141689-153142223) | |
| 1-118, gnl|Mm7|chr2 (153141696-153141798) | |
| 1-118, gnl|monDom2|scaffold_38 (625510-624955) | |
| 1-118, gnl|panTro1|chr21 (32185867-32186411) | |
| 1-118, gnl|rheMac2|chr10 (32142201-32141658) | |
| 1-118, gnl|rn3|chr3 (143669999-143670533) | |
| 141-768, gnl|bosTau2|chr13 (42759308-42758681) | |
| 141-768, gnl|canFam2|chr24 (24772688-24773234) | |
| 141-768, gnl|danRer3|chrUn (43751042-43750508) | |
| 141-768, gnl|dasNov1|scaffold_18239 (5014-5560) | |
| 141-768, gnl|echTel1|scaffold_281889 (7957-8485) | |
| 141-768, gnl|galGal2|chr20 (9737825-9738410) | |
| 141-768, gnl|hg17|chr20 (30487555-30488098) | |
| 141-768, gnl|Hg17|chr20 (30487699-30488326) | |
| 141-768, gnl|loxAfr1|scaffold_21892 (45935-46481) | |
| 141-768, gnl|mm7|chr2 (153141689-153142223) | |
| 141-768, gnl|Mm7|chr2 (153141821-153142454) | |
| 141-768, gnl|monDom2|scaffold_38 (625510-624955) | |
| 141-768, gnl|panTro1|chr21 (32185867-32186411) | |
| 141-768, gnl|rheMac2|chr10 (32142201-32141658) | |
| 141-768, gnl|rn3|chr3 (143669999-143670533) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-118, gnl|bosTau2|chr13 (42759427-42759310) | |
| 1-118, gnl|canFam2|chr24 (24772688-24773234) | |
| 1-118, gnl|danRer3|chrUn (43751042-43750508) | |
| 1-118, gnl|dasNov1|scaffold_18239 (5014-5560) | |
| 1-118, gnl|echTel1|scaffold_281889 (7957-8485) | |
| 1-118, gnl|galGal2|chr20 (9737825-9738410) | |
| 1-118, gnl|hg17|chr20 (30487555-30488098) | |
| 1-118, gnl|Hg17|chr20 (30487562-30487676) | |
| 1-118, gnl|loxAfr1|scaffold_21892 (45935-46481) | |
| 1-118, gnl|mm7|chr2 (153141689-153142223) | |
| 1-118, gnl|Mm7|chr2 (153141696-153141798) | |
| 1-118, gnl|monDom2|scaffold_38 (625510-624955) | |
| 1-118, gnl|panTro1|chr21 (32185867-32186411) | |
| 1-118, gnl|rheMac2|chr10 (32142201-32141658) | |
| 1-118, gnl|rn3|chr3 (143669999-143670533) | |
| 141-768, gnl|bosTau2|chr13 (42759308-42758681) | |
| 141-768, gnl|canFam2|chr24 (24772688-24773234) | |
| 141-768, gnl|danRer3|chrUn (43751042-43750508) | |
| 141-768, gnl|dasNov1|scaffold_18239 (5014-5560) | |
| 141-768, gnl|echTel1|scaffold_281889 (7957-8485) | |
| 141-768, gnl|galGal2|chr20 (9737825-9738410) | |
| 141-768, gnl|hg17|chr20 (30487555-30488098) | |
| 141-768, gnl|Hg17|chr20 (30487699-30488326) | |
| 141-768, gnl|loxAfr1|scaffold_21892 (45935-46481) | |
| 141-768, gnl|mm7|chr2 (153141689-153142223) | |
| 141-768, gnl|Mm7|chr2 (153141821-153142454) | |
| 141-768, gnl|monDom2|scaffold_38 (625510-624955) | |
| 141-768, gnl|panTro1|chr21 (32185867-32186411) | |
| 141-768, gnl|rheMac2|chr10 (32142201-32141658) | |
| 141-768, gnl|rn3|chr3 (143669999-143670533) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jca (0.11396) |