Non-Coding RNA Search

Ss1.1-Pig2-108E17.5

Sequence:


               
               CCTAATCCTCAGAGGTTTGACCGAATTGCACACACCAAGGAGACCATGCTCTCTGATGGC
TTGAACACACTCACCTACCTGGTGTTGGACATAGAGAGATACCCGTTATTTACCAAAATC
ACAGTGGACATCGGGACACCGAGCTAGCATCTTGGTACACTGATAAGAGACCCAAAAATG
GCCAAGGCCCTCTTCTGGGTGTCTCTGCCAGTCTGGGGCTGGTCCCTCTCATTCTTACCA
ATCAGAGTGATAGGCCCTCTCCGCTCACCATTCAGACGCCTTTCCAGACGACCAGGACGA
GTGGGATGTTTCGCTCCCAATGTGGCTCGGCGCGTGACTTCTTAGCCCTACGAGGTGTAT
GTAAGCATAGAGACTGTCAGCCTTTGGGGGATCCTCAGCATGTTCACAGTGTCACCCCAA
AGAATCAGAGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTAATCCTCAGAGGTTTGACCGAATTGCACACACCAAGGAGACCATGCTCTCTGATGGC
TTGAACACACTCACCTACCTGGTGTTGGACATAGAGAGATACCCGTTATTTACCAAAATC
ACAGTGGACATCGGGACACCGAGCTAGCATCTTGGTACACTGATAAGAGACCCAAAAATG
GCCAAGGCCCTCTTCTGGGTGTCTCTGCCAGTCTGGGGCTGGTCCCTCTCATTCTTACCA
ATCAGAGTGATAGGCCCTCTCCGCTCACCATTCAGACGCCTTTCCAGACGACCAGGACGA
GTGGGATGTTTCGCTCCCAATGTGGCTCGGCGCGTGACTTCTTAGCCCTACGAGGTGTAT
GTAAGCATAGAGACTGTCAGCCTTTGGGGGATCCTCAGCATGTTCACAGTGTCACCCCAA
AGAATCAGAGCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               165-282, - strand, RNAz p=0.722048

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               165-282, - strand, RNAz p=0.722048

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               6-432, gnl|bosTau2|chr5 (33699625-33700046)
               

               
               6-432, gnl|Hg17|chr9 (33103593-33103184)
               

               
               6-432, gnl|Mm7|chr4 (40945789-40945378)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-432, gnl|bosTau2|chr5 (33699625-33700046)
               

               
               6-432, gnl|Hg17|chr9 (33103593-33103184)
               

               
               6-432, gnl|Mm7|chr4 (40945789-40945378)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               cje (0.165235)
               

               
               clu (0.119646)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.165235)
               

               
               clu (0.119646)

	6-432, gnl\|bosTau2\|chr5 (33699625-33700046)
	6-432, gnl\|Hg17\|chr9 (33103593-33103184)
	6-432, gnl\|Mm7\|chr4 (40945789-40945378)