Non-Coding RNA Search

Ss1.1-Pig2-108K16.5

Sequence:


               
               CTGTGATGGAGTCTGAAATGAAGTTTGACAAGGACCAAGACGGACTCATTGAGAACGGAG
GCTATGCAGACCAAACCTATGATGGATGGGTCACCACAGGCCCCAGTGCTTACTGTGGAG
GACTGTGGCTGGCAGCTGTGGCTGTGATGGTCCAGATGGCTGCTCTGTGTGGGACCAGGG
AGGTCCAGGATCAGTTTTCTTCCATCCTCAGCCGGGGCCGAGAAGCCTATGAGAGACTGC
TCTGGAACGGCCGTTATTACAACTATGACTGCAGCTCTCAGCCTCAGGCCTATAGCATCA
TGTCTGATCAGTGTGCCGGCCAGTGGTTCCTGAGGGCCAGTGGCCTAGGAGAAGGAGATA
CTGAGGTATTTCCTACCCCACACGTGGTCCAAGCTCTCCAGACCATCTTTGAGTTCAATG
TCCAGGCCTTTGCAGGAGGGGCCATGGGGGCTGTGAATGGAATGCAGCCCCATGGTGTTC
CTGATAGATCCAGCGTCCAGTCTGATGAAGTCTGGGTGGGTGTGGTCTACGCGCTGGCAG
CCACCATGATCCAAGAGGGCCTGACCTGGGAGGGCTTCCGTACAGCAGAAGGCTGCTACC
GTACTGTGTGGGAGCGCCTGGGCCTGGCCTTCCAGACCCCTGAGGCATACTGCCAGCAGC
GGGTGTTCCGCTCACTCGCCTACATGCGACCACTGAGCATCTGGGCCATGCAGCTAGCCC
TGCAGCAGCAGCAGCATAAAAAGGCCTCTGGGCCAACAGCCAAACAGGACACAGGACAAA
GCTCCGGCCTAAAACCTGGACCAAAGGAAGCCATGCAAACCTGAGCCCAGAGGGGGAAGG
AGGCACTAACAGCCCAGCCTCCAGCCAGGCCTTTCCTCCTCCACCACCCCGACCCCATCC
AGACTCCTGCAACCCTGAGCCACCAGGACAATCATGCGCTCCCTTCTCCCCACCAACCAC
GCCAGTAAAGAGGGGTTGAGGGTGACCCAAGCATCAGAATCACTTATTTATTTCTTTCTT
CACCCCATCCCCTCATTGCATGAAATGTTCAAGGAAGTCAGTGGACTCTCCCAGGCCCCT
TAATGGAACAACAGACATACATGGGTGCAAATAAAACCCCAGAAAGCCAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTGATGGAGTCTGAAATGAAGTTTGACAAGGACCAAGACGGACTCATTGAGAACGGAG
GCTATGCAGACCAAACCTATGATGGATGGGTCACCACAGGCCCCAGTGCTTACTGTGGAG
GACTGTGGCTGGCAGCTGTGGCTGTGATGGTCCAGATGGCTGCTCTGTGTGGGACCAGGG
AGGTCCAGGATCAGTTTTCTTCCATCCTCAGCCGGGGCCGAGAAGCCTATGAGAGACTGC
TCTGGAACGGCCGTTATTACAACTATGACTGCAGCTCTCAGCCTCAGGCCTATAGCATCA
TGTCTGATCAGTGTGCCGGCCAGTGGTTCCTGAGGGCCAGTGGCCTAGGAGAAGGAGATA
CTGAGGTATTTCCTACCCCACACGTGGTCCAAGCTCTCCAGACCATCTTTGAGTTCAATG
TCCAGGCCTTTGCAGGAGGGGCCATGGGGGCTGTGAATGGAATGCAGCCCCATGGTGTTC
CTGATAGATCCAGCGTCCAGTCTGATGAAGTCTGGGTGGGTGTGGTCTACGCGCTGGCAG
CCACCATGATCCAAGAGGGCCTGACCTGGGAGGGCTTCCGTACAGCAGAAGGCTGCTACC
GTACTGTGTGGGAGCGCCTGGGCCTGGCCTTCCAGACCCCTGAGGCATACTGCCAGCAGC
GGGTGTTCCGCTCACTCGCCTACATGCGACCACTGAGCATCTGGGCCATGCAGCTAGCCC
TGCAGCAGCAGCAGCATAAAAAGGCCTCTGGGCCAACAGCCAAACAGGACACAGGACAAA
GCTCCGGCCTAAAACCTGGACCAAAGGAAGCCATGCAAACCTGAGCCCAGAGGGGGAAGG
AGGCACTAACAGCCCAGCCTCCAGCCAGGCCTTTCCTCCTCCACCACCCCGACCCCATCC
AGACTCCTGCAACCCTGAGCCACCAGGACAATCATGCGCTCCCTTCTCCCCACCAACCAC
GCCAGTAAAGAGGGGTTGAGGGTGACCCAAGCATCAGAATCACTTATTTATTTCTTTCTT
CACCCCATCCCCTCATTGCATGAAATGTTCAAGGAAGTCAGTGGACTCTCCCAGGCCCCT
TAATGGAACAACAGACATACATGGGTGCAAATAAAACCCCAGAAAGCCAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57093691|ref|XP_531991.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57093691|ref|XP_531991.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               596-792, - strand, RNAz p=0.997452
               

               
               936-1049, - strand, RNAz p=0.5737

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               596-792, - strand, RNAz p=0.997452
               

               
               936-1049, - strand, RNAz p=0.5737

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_006368, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_006368, -

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               104-250, gnl|bosTau2|chr8 (28472684-28472538)
               

               
               104-250, gnl|Hg17|chr9 (35728374-35728228)
               

               
               104-250, gnl|Mm7|chr4 (43582155-43582009)
               


               
               556-1129, gnl|bosTau2|chr8 (28471789-28471198)
               

               
               556-1129, gnl|Hg17|chr9 (35727446-35726863)
               

               
               556-1129, gnl|Mm7|chr4 (43581283-43580742)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               104-250, gnl|bosTau2|chr8 (28472684-28472538)
               

               
               104-250, gnl|Hg17|chr9 (35728374-35728228)
               

               
               104-250, gnl|Mm7|chr4 (43582155-43582009)
               


               
               556-1129, gnl|bosTau2|chr8 (28471789-28471198)
               

               
               556-1129, gnl|Hg17|chr9 (35727446-35726863)
               

               
               556-1129, gnl|Mm7|chr4 (43581283-43580742)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               nje (0.33184)
               

               
               jej (0.296765)
               

               
               col (0.195008)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)

Expressed library(ies): 10 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (0.33184)
               

               
               jej (0.296765)
               

               
               col (0.195008)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               hlv (0.139256)
               

               
               pla (0.133672)
               

               
               cly (0.120642)
               

               
               pgl (0.118483)
               

               
               cty (0.10408)

	596-792, - strand, RNAz p=0.997452
	936-1049, - strand, RNAz p=0.5737

	104-250, gnl\|bosTau2\|chr8 (28472684-28472538)
	104-250, gnl\|Hg17\|chr9 (35728374-35728228)
	104-250, gnl\|Mm7\|chr4 (43582155-43582009)

	556-1129, gnl\|bosTau2\|chr8 (28471789-28471198)
	556-1129, gnl\|Hg17\|chr9 (35727446-35726863)
	556-1129, gnl\|Mm7\|chr4 (43581283-43580742)

	nje (0.33184)
	jej (0.296765)
	col (0.195008)
	ill (0.175593)
	fbs (0.175346)
	hlv (0.139256)
	pla (0.133672)
	cly (0.120642)
	pgl (0.118483)
	cty (0.10408)