Ss1.1-Pig2-108L20.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGGGGAGCCGGGAAGCGGATTCCGGGAAGCGGAGTCTGTGACGGGGCTTGGAGATTGAT TCCTCTCCCAGCGCCGCCCCCCTTTCCGTGTGGGCTCTCAACTTCCAGAACCCTCTGCAC CTACCAACTTGATGTCCGGCGTTAAGTTATGGCACGTTGGTGCTTCAGCGCCCCTGGTGC CCATCGAGGACTTGGAGAACCCGAAGTTCATCGGCAAAGGAGGATTTGGCACGGTCTTCC GGGCGCAGCACAAGACTTGGGGTTTAGACGTGGCGGTCAAGATCGTTAACTCGCAGGCGA TATCCAGGGAGGTGAAGGCCATGGCAGGTCTGCATAACAGCTATGTGCTGCTCCTGCTGG GGATCACAGAGAAGCTGGAGTGGGACTATGTATCTGGGCCGGCTCTGGTGACTCAGTTCA TGGAGAATGGTTCCCTGGCGGAGCTGCTACAGCCCCAGTGCCCTCGTCCCTGGCCGCTTC TCTGCCGCCTGCTCCAGGAGTTGGTGCTCGGGATGTGCTACCTGCACAGCCAGGACCCTG TGCTCCTCCATCGGGACCTCAAACCCTCCAACGTCCTGCTAGACTCAGAGCTCCATGCCA AGCTAGCAGACTTTGGCCTGTCCACATTTCAGGGCAGGTTCACAGTCAAGGGCAGAATCT GGGGAATCAGGTTGCACCCCAGCCTACTTGGCCCCAGAACTGCTGGCTGATATAAACCGA AAGGCCTCCATGGCCAGTGATGTCTACAGCTTTGGGATCCTGATGTGGGCGGTGCTAGCC GGAAGAGAAGCTGAGGTGGCGACCCAGATATCACTGGTGCGGGAAGCAGTGTGTGAAAGG CACGTCCGACCCCCATTGGATGAACTGCCCCAGTCTGGCCCTGAGAATCCTGGTTTGGAA GGACTGAAGGATTTAATGCAGCGCTGCTGGAGCCATGACCCCCGGAATAGGCCCTCCTTC CAAGACTGCCGACCCAACACCCAGGGAGCCCTCGATCTGGTAATGAAACAAGATGTAACT TGTAAGAAGATGAATGCCGCGGTCTCCACAGTGAAGGAGTTCTTGTCTGAGCACAAGAGC AGCAGCAGCTTGTTGTCTGTCCGTGAGCCAGGCCTGGAAAGTCCAGAAATGGATGGCCTT AGGGGGAGCACAGGAAGCCATGATTCTGTGGTCTCTGAAATGATGAACAGCCTGAACCTG GAGGAGTACCCCAGCTCTGTTCCTGAAAAATGTACAAACCCTCCTGAGAGGATCAGGGCC CAGAAAGAGCAGGTTCAGCCTACCTGGACAGCAGAGATACCTTCAGATTCAACAGCCCAA CCTCCTCAAACCCCAGAGACCTTACCTTTCATGAGCCAGAAGCCCAGCCACACCTCAGCT TGGCCCCCAGGCCCTGGACCCCAAGAGAATCAGGGGCCTGAAAGACGTGGCACCAACTGG TCTCCCATGGCACCAGGGCCAAATCCAATATCAGGGCCATGGTCTTCTCAGTTACTTTAC AACCAAGGGGTGCAGATTGGAAACAGCAACTACATGGTTATAAAAGGAAGAACTGCCTCA TCCACGCGGGGCCCGGTACCTTGGGGCATGAAGAAGGGCCCCCAGCACAAGTAGCTTTCA AACAACTAGAAAGAAGGACTGCAAGAAACGGAAGCCTGGAGTGGGCCACAGGGCTGGTAT CATGATAGCAAGTATCAAAGCAGCTTCTGAACTGCCTTCTGGAAAACCCAGCATTCTCTG AGGGTCATTAGGCCTGTACCCGAACTGTCTTTGTTCCCCCAGGACTCAATAAACTTGGTG GAATTTTAGCCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGGGGAGCCGGGAAGCGGATTCCGGGAAGCGGAGTCTGTGACGGGGCTTGGAGATTGAT TCCTCTCCCAGCGCCGCCCCCCTTTCCGTGTGGGCTCTCAACTTCCAGAACCCTCTGCAC CTACCAACTTGATGTCCGGCGTTAAGTTATGGCACGTTGGTGCTTCAGCGCCCCTGGTGC CCATCGAGGACTTGGAGAACCCGAAGTTCATCGGCAAAGGAGGATTTGGCACGGTCTTCC GGGCGCAGCACAAGACTTGGGGTTTAGACGTGGCGGTCAAGATCGTTAACTCGCAGGCGA TATCCAGGGAGGTGAAGGCCATGGCAGGTCTGCATAACAGCTATGTGCTGCTCCTGCTGG GGATCACAGAGAAGCTGGAGTGGGACTATGTATCTGGGCCGGCTCTGGTGACTCAGTTCA TGGAGAATGGTTCCCTGGCGGAGCTGCTACAGCCCCAGTGCCCTCGTCCCTGGCCGCTTC TCTGCCGCCTGCTCCAGGAGTTGGTGCTCGGGATGTGCTACCTGCACAGCCAGGACCCTG TGCTCCTCCATCGGGACCTCAAACCCTCCAACGTCCTGCTAGACTCAGAGCTCCATGCCA AGCTAGCAGACTTTGGCCTGTCCACATTTCAGGGCAGGTTCACAGTCAAGGGCAGAATCT GGGGAATCAGGTTGCACCCCAGCCTACTTGGCCCCAGAACTGCTGGCTGATATAAACCGA AAGGCCTCCATGGCCAGTGATGTCTACAGCTTTGGGATCCTGATGTGGGCGGTGCTAGCC GGAAGAGAAGCTGAGGTGGCGACCCAGATATCACTGGTGCGGGAAGCAGTGTGTGAAAGG CACGTCCGACCCCCATTGGATGAACTGCCCCAGTCTGGCCCTGAGAATCCTGGTTTGGAA GGACTGAAGGATTTAATGCAGCGCTGCTGGAGCCATGACCCCCGGAATAGGCCCTCCTTC CAAGACTGCCGACCCAACACCCAGGGAGCCCTCGATCTGGTAATGAAACAAGATGTAACT TGTAAGAAGATGAATGCCGCGGTCTCCACAGTGAAGGAGTTCTTGTCTGAGCACAAGAGC AGCAGCAGCTTGTTGTCTGTCCGTGAGCCAGGCCTGGAAAGTCCAGAAATGGATGGCCTT AGGGGGAGCACAGGAAGCCATGATTCTGTGGTCTCTGAAATGATGAACAGCCTGAACCTG GAGGAGTACCCCAGCTCTGTTCCTGAAAAATGTACAAACCCTCCTGAGAGGATCAGGGCC CAGAAAGAGCAGGTTCAGCCTACCTGGACAGCAGAGATACCTTCAGATTCAACAGCCCAA CCTCCTCAAACCCCAGAGACCTTACCTTTCATGAGCCAGAAGCCCAGCCACACCTCAGCT TGGCCCCCAGGCCCTGGACCCCAAGAGAATCAGGGGCCTGAAAGACGTGGCACCAACTGG TCTCCCATGGCACCAGGGCCAAATCCAATATCAGGGCCATGGTCTTCTCAGTTACTTTAC AACCAAGGGGTGCAGATTGGAAACAGCAACTACATGGTTATAAAAGGAAGAACTGCCTCA TCCACGCGGGGCCCGGTACCTTGGGGCATGAAGAAGGGCCCCCAGCACAAGTAGCTTTCA AACAACTAGAAAGAAGGACTGCAAGAAACGGAAGCCTGGAGTGGGCCACAGGGCTGGTAT CATGATAGCAAGTATCAAAGCAGCTTCTGAACTGCCTTCTGGAAAACCCAGCATTCTCTG AGGGTCATTAGGCCTGTACCCGAACTGTCTTTGTTCCCCCAGGACTCAATAAACTTGGTG GAATTTTAGCCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 335-1414, + strand, RNAz p=0.925896 | |
| 601-708, + strand, RNAz p=0.990818 | |
| 648-760, + strand, RNAz p=0.839556 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 335-1414, + strand, RNAz p=0.925896 | |
| 601-708, + strand, RNAz p=0.990818 | |
| 648-760, + strand, RNAz p=0.839556 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of BC041668, + |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 159-293, gnl|bosTau2|chr10 (12164611-12164745) | |
| 159-293, gnl|Hg17|chr14 (23878636-23878502) | |
| 159-293, gnl|Mm7|chr14 (50655727-50655590) | |
| 296-538, gnl|bosTau2|chr10 (12164893-12165135) | |
| 296-538, gnl|Hg17|chr14 (23878367-23878125) | |
| 296-538, gnl|Mm7|chr14 (50655483-50655241) | |
| 601-760, gnl|bosTau2|chr10 (12165365-12165523) | |
| 601-760, gnl|canFam2|chr8 (7313553-7313729) | |
| 601-760, gnl|echTel1|scaffold_292891 (9674-9861) | |
| 601-760, gnl|hg17|chr14 (23877444-23877626) | |
| 601-760, gnl|Hg17|chr14 (23877615-23877457) | |
| 601-760, gnl|loxAfr1|scaffold_12312 (11474-11288) | |
| 601-760, gnl|mm7|chr14 (50654612-50654805) | |
| 601-760, gnl|Mm7|chr14 (50654794-50654624) | |
| 601-760, gnl|monDom2|scaffold_12 (25354054-25353873) | |
| 601-760, gnl|oryCun1|scaffold_178102 (222716-222859) | |
| 601-760, gnl|panTro1|chr15 (22781767-22781949) | |
| 601-760, gnl|rheMac2|chr7 (87232937-87233119) | |
| 601-760, gnl|rn3|chr15 (33965242-33965426) | |
| 803-964, gnl|bosTau2|chr10 (12165912-12166073) | |
| 803-964, gnl|Hg17|chr14 (23877080-23876919) | |
| 803-964, gnl|Mm7|chr14 (50654271-50654110) | |
| 1108-1414, gnl|bosTau2|chr10 (12166532-12166835) | |
| 1108-1414, gnl|canFam2|chr8 (7311924-7312490) | |
| 1108-1414, gnl|dasNov1|scaffold_75701 (816-264) | |
| 1108-1414, gnl|echTel1|scaffold_292891 (8324-8860) | |
| 1108-1414, gnl|hg17|chr14 (23875996-23876574) | |
| 1108-1414, gnl|Hg17|chr14 (23876449-23876131) | |
| 1108-1414, gnl|loxAfr1|scaffold_12312 (12891-12317) | |
| 1108-1414, gnl|mm7|chr14 (50653277-50653778) | |
| 1108-1414, gnl|Mm7|chr14 (50653654-50653378) | |
| 1108-1414, gnl|panTro1|chr15 (22780319-22780897) | |
| 1108-1414, gnl|rheMac2|chr7 (87231509-87232087) | |
| 1108-1414, gnl|rn3|chr15 (33963918-33964425) | |
| 1473-1811, gnl|bosTau2|chr10 (12167674-12168021) | |
| 1473-1811, gnl|Hg17|chr14 (23875443-23875068) | |
| 1473-1811, gnl|Mm7|chr14 (50652706-50652355) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 159-293, gnl|bosTau2|chr10 (12164611-12164745) | |
| 159-293, gnl|Hg17|chr14 (23878636-23878502) | |
| 159-293, gnl|Mm7|chr14 (50655727-50655590) | |
| 296-538, gnl|bosTau2|chr10 (12164893-12165135) | |
| 296-538, gnl|Hg17|chr14 (23878367-23878125) | |
| 296-538, gnl|Mm7|chr14 (50655483-50655241) | |
| 601-760, gnl|bosTau2|chr10 (12165365-12165523) | |
| 601-760, gnl|canFam2|chr8 (7313553-7313729) | |
| 601-760, gnl|echTel1|scaffold_292891 (9674-9861) | |
| 601-760, gnl|hg17|chr14 (23877444-23877626) | |
| 601-760, gnl|Hg17|chr14 (23877615-23877457) | |
| 601-760, gnl|loxAfr1|scaffold_12312 (11474-11288) | |
| 601-760, gnl|mm7|chr14 (50654612-50654805) | |
| 601-760, gnl|Mm7|chr14 (50654794-50654624) | |
| 601-760, gnl|monDom2|scaffold_12 (25354054-25353873) | |
| 601-760, gnl|oryCun1|scaffold_178102 (222716-222859) | |
| 601-760, gnl|panTro1|chr15 (22781767-22781949) | |
| 601-760, gnl|rheMac2|chr7 (87232937-87233119) | |
| 601-760, gnl|rn3|chr15 (33965242-33965426) | |
| 803-964, gnl|bosTau2|chr10 (12165912-12166073) | |
| 803-964, gnl|Hg17|chr14 (23877080-23876919) | |
| 803-964, gnl|Mm7|chr14 (50654271-50654110) | |
| 1108-1414, gnl|bosTau2|chr10 (12166532-12166835) | |
| 1108-1414, gnl|canFam2|chr8 (7311924-7312490) | |
| 1108-1414, gnl|dasNov1|scaffold_75701 (816-264) | |
| 1108-1414, gnl|echTel1|scaffold_292891 (8324-8860) | |
| 1108-1414, gnl|hg17|chr14 (23875996-23876574) | |
| 1108-1414, gnl|Hg17|chr14 (23876449-23876131) | |
| 1108-1414, gnl|loxAfr1|scaffold_12312 (12891-12317) | |
| 1108-1414, gnl|mm7|chr14 (50653277-50653778) | |
| 1108-1414, gnl|Mm7|chr14 (50653654-50653378) | |
| 1108-1414, gnl|panTro1|chr15 (22780319-22780897) | |
| 1108-1414, gnl|rheMac2|chr7 (87231509-87232087) | |
| 1108-1414, gnl|rn3|chr15 (33963918-33964425) | |
| 1473-1811, gnl|bosTau2|chr10 (12167674-12168021) | |
| 1473-1811, gnl|Hg17|chr14 (23875443-23875068) | |
| 1473-1811, gnl|Mm7|chr14 (50652706-50652355) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| duo (0.345602) | |
| cly (0.241284) | |
| col (0.195008) | |
| sin (0.174948) | |
| nje (0.16592) | |
| cag (0.151194) | |
| lnt (0.142308) | |
| ute (0.132784) | |
| eep (0.122564) | |
| clu (0.119646) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| duo (0.345602) | |
| cly (0.241284) | |
| col (0.195008) | |
| sin (0.174948) | |
| nje (0.16592) | |
| cag (0.151194) | |
| lnt (0.142308) | |
| ute (0.132784) | |
| eep (0.122564) | |
| clu (0.119646) |