Ss1.1-Pig2-108M03.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGTCCCGCTCCGGCCTGGACCGGGGCCACTGCCTCTGCTCTTGCTGCCTCTGCTGCTGCT GCGCGCCGGCCCGGTGCGCGCCGACAGTAAGGTGTTTGGCGACGTGGACCAGGTGCGCAT GACCTCCGAGGGCTCCGACTGCCGCTGCAAGTGCATCATGCGGCCACTGAGCAAGGACGC GTGCAGCCGGGTGCGCAGCGGGCGGGCGCGGGTGGAGGACTTCTACACTGTGGAGACCGT GAGCTCGGGGACCGACTGCCGATGCTCCTGCACCGCGCCGCCCTCCTCACTCAACCCCTG CGAGAACGAGTGGAAGATGGAGAAGCTCAAGAAACAGGCGCCCGAGCTCCTCAAGCTGCA GTCCATGGTGGATCTCCTGGAGGGCACCTTGTACAGCATGGACCTGATGAAAGTGCACGC CTACGTCCACAAGCTGGCTTCCCAGATGAACACGCTGGAAGAGAGCATCAAGGCCAACCT GAGCCGGGAGAACGAGGTGGTGAGGGAGAGCATGCGCCACTTCAGCGAGCAGCTGAAGCA CTACGAGAACCACTCGGCCATCATGATGAGCATCAAGAAGGAGCTCTCCAGCCTGGGTCT CCAGCTGCTGCAGAAGGATGCAGCCTCGGTGCCCGGCGCCCCCCCAGCCACCGGCCCTGG CAGCAAGGCTCAGGACACAGCTGGAGGGAAAGGCAAGGACAGCAACAAGCATGGCAGCGT GCAGAAGACCTTTGTGGACAAGGGCCTCCCCAGACCTCCCAAGGAGAAGCTGCTGAAGGC GGAAAAGCTGAAGAAGGAGGGTGGCAAGGCCCGATTCCCTCAGCCCACAGCCAAGCCCCG GGCCCTGGCCCAGCAGCAGGCCGTGATCCGAGGCAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGTCCCGCTCCGGCCTGGACCGGGGCCACTGCCTCTGCTCTTGCTGCCTCTGCTGCTGCT GCGCGCCGGCCCGGTGCGCGCCGACAGTAAGGTGTTTGGCGACGTGGACCAGGTGCGCAT GACCTCCGAGGGCTCCGACTGCCGCTGCAAGTGCATCATGCGGCCACTGAGCAAGGACGC GTGCAGCCGGGTGCGCAGCGGGCGGGCGCGGGTGGAGGACTTCTACACTGTGGAGACCGT GAGCTCGGGGACCGACTGCCGATGCTCCTGCACCGCGCCGCCCTCCTCACTCAACCCCTG CGAGAACGAGTGGAAGATGGAGAAGCTCAAGAAACAGGCGCCCGAGCTCCTCAAGCTGCA GTCCATGGTGGATCTCCTGGAGGGCACCTTGTACAGCATGGACCTGATGAAAGTGCACGC CTACGTCCACAAGCTGGCTTCCCAGATGAACACGCTGGAAGAGAGCATCAAGGCCAACCT GAGCCGGGAGAACGAGGTGGTGAGGGAGAGCATGCGCCACTTCAGCGAGCAGCTGAAGCA CTACGAGAACCACTCGGCCATCATGATGAGCATCAAGAAGGAGCTCTCCAGCCTGGGTCT CCAGCTGCTGCAGAAGGATGCAGCCTCGGTGCCCGGCGCCCCCCCAGCCACCGGCCCTGG CAGCAAGGCTCAGGACACAGCTGGAGGGAAAGGCAAGGACAGCAACAAGCATGGCAGCGT GCAGAAGACCTTTGTGGACAAGGGCCTCCCCAGACCTCCCAAGGAGAAGCTGCTGAAGGC GGAAAAGCTGAAGAAGGAGGGTGGCAAGGCCCGATTCCCTCAGCCCACAGCCAAGCCCCG GGCCCTGGCCCAGCAGCAGGCCGTGATCCGAGGCAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 236-620, + strand, RNAz p=0.800056 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 236-620, + strand, RNAz p=0.800056 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 90-355, gnl|bosTau2|chr11 (73098954-73099219) | |
| 90-355, gnl|canFam2|chr9 (61552637-61552359) | |
| 90-355, gnl|danRer3|chr8 (36514990-36515260) | |
| 90-355, gnl|echTel1|scaffold_314228 (810-1088) | |
| 90-355, gnl|fr1|chrUn (232652106-232651839) | |
| 90-355, gnl|galGal2|chr17 (932534-932268) | |
| 90-355, gnl|hg17|chr9 (124628807-124629085) | |
| 90-355, gnl|Hg17|chr9 (124628806-124629071) | |
| 90-355, gnl|loxAfr1|scaffold_7314 (33083-32805) | |
| 90-355, gnl|mm7|chr2 (38948826-38949098) | |
| 90-355, gnl|Mm7|chr2 (38948825-38949090) | |
| 90-355, gnl|monDom2|scaffold_38 (18859701-18859974) | |
| 90-355, gnl|oryCun1|scaffold_206652 (42475-42206) | |
| 90-355, gnl|panTro1|chr11 (109370098-109370376) | |
| 90-355, gnl|rheMac2|chr15 (10962518-10962240) | |
| 90-355, gnl|rn3|chr3 (18627536-18627808) | |
| 90-355, gnl|tetNig1|chrUn_random (86039085-86038818) | |
| 90-355, gnl|xenTro1|scaffold_1164 (217866-218134) | |
| 462-674, gnl|bosTau2|chr11 (73108844-73109053) | |
| 462-674, gnl|canFam2|chr9 (61543980-61543797) | |
| 462-674, gnl|danRer3|chr8 (36518273-36518454) | |
| 462-674, gnl|dasNov1|scaffold_1967 (15285-15103) | |
| 462-674, gnl|echTel1|scaffold_318178 (5582-5399) | |
| 462-674, gnl|fr1|chrUn (232650837-232650663) | |
| 462-674, gnl|galGal2|chr17 (931918-931747) | |
| 462-674, gnl|hg17|chr9 (124641100-124641286) | |
| 462-674, gnl|Hg17|chr9 (124641116-124641325) | |
| 462-674, gnl|loxAfr1|scaffold_7314 (24031-23848) | |
| 462-674, gnl|mm7|chr2 (38956217-38956399) | |
| 462-674, gnl|Mm7|chr2 (38956229-38956441) | |
| 462-674, gnl|monDom2|scaffold_38 (18866999-18867187) | |
| 462-674, gnl|panTro1|chr11 (109382378-109382564) | |
| 462-674, gnl|rheMac2|chr15 (10949621-10949435) | |
| 462-674, gnl|rn3|chr3 (18635131-18635319) | |
| 462-674, gnl|tetNig1|chrUn_random (86038075-86037909) | |
| 462-674, gnl|xenTro1|scaffold_1164 (229163-229342) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 90-355, gnl|bosTau2|chr11 (73098954-73099219) | |
| 90-355, gnl|canFam2|chr9 (61552637-61552359) | |
| 90-355, gnl|danRer3|chr8 (36514990-36515260) | |
| 90-355, gnl|echTel1|scaffold_314228 (810-1088) | |
| 90-355, gnl|fr1|chrUn (232652106-232651839) | |
| 90-355, gnl|galGal2|chr17 (932534-932268) | |
| 90-355, gnl|hg17|chr9 (124628807-124629085) | |
| 90-355, gnl|Hg17|chr9 (124628806-124629071) | |
| 90-355, gnl|loxAfr1|scaffold_7314 (33083-32805) | |
| 90-355, gnl|mm7|chr2 (38948826-38949098) | |
| 90-355, gnl|Mm7|chr2 (38948825-38949090) | |
| 90-355, gnl|monDom2|scaffold_38 (18859701-18859974) | |
| 90-355, gnl|oryCun1|scaffold_206652 (42475-42206) | |
| 90-355, gnl|panTro1|chr11 (109370098-109370376) | |
| 90-355, gnl|rheMac2|chr15 (10962518-10962240) | |
| 90-355, gnl|rn3|chr3 (18627536-18627808) | |
| 90-355, gnl|tetNig1|chrUn_random (86039085-86038818) | |
| 90-355, gnl|xenTro1|scaffold_1164 (217866-218134) | |
| 462-674, gnl|bosTau2|chr11 (73108844-73109053) | |
| 462-674, gnl|canFam2|chr9 (61543980-61543797) | |
| 462-674, gnl|danRer3|chr8 (36518273-36518454) | |
| 462-674, gnl|dasNov1|scaffold_1967 (15285-15103) | |
| 462-674, gnl|echTel1|scaffold_318178 (5582-5399) | |
| 462-674, gnl|fr1|chrUn (232650837-232650663) | |
| 462-674, gnl|galGal2|chr17 (931918-931747) | |
| 462-674, gnl|hg17|chr9 (124641100-124641286) | |
| 462-674, gnl|Hg17|chr9 (124641116-124641325) | |
| 462-674, gnl|loxAfr1|scaffold_7314 (24031-23848) | |
| 462-674, gnl|mm7|chr2 (38956217-38956399) | |
| 462-674, gnl|Mm7|chr2 (38956229-38956441) | |
| 462-674, gnl|monDom2|scaffold_38 (18866999-18867187) | |
| 462-674, gnl|panTro1|chr11 (109382378-109382564) | |
| 462-674, gnl|rheMac2|chr15 (10949621-10949435) | |
| 462-674, gnl|rn3|chr3 (18635131-18635319) | |
| 462-674, gnl|tetNig1|chrUn_random (86038075-86037909) | |
| 462-674, gnl|xenTro1|scaffold_1164 (229163-229342) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eru (0.120048) |