Non-Coding RNA Search

Ss1.1-Pig2-109B10.5

Sequence:


               
               CAATCATGGTACCTGTAGGGCTTGTATTTGTGGTCTTTGCCCTGCATTTCTACCGCTCCT
TGGTGGCACACAAGACAGACCGCCACAAGCAAGAGCTAGAGGAGCTGAGTCGCCTGCAGG
GGGAGCTGCAGGCTGTGTAAGGCTGGTGTTAGCCACACTGCAAGCACTGCCTCCTTCAGG
GGTCTGACTGAGGCCTCAGGTCTACAGACCCCATTCCCTGCCCCTGCCTGGAGCTACTTC
CTGTGGCCACTCAGGTAGAGAACAGATTTCTGCCCTCAGGGCCCTTTGGGCTGGGCCTTG
GGGTGGCTCCCACATTCCCAGGGATTCTCCCTGTCACTCTGTCCCATGGGTTTTGTAAGC
TCTACTGTGCACTTGGGCTGGGAGGAGCAAAGGAAGAGGAAGGTCCTCAGTCCAAGGCTG
ATGCTGTAGGTAGAGGGGAAGCAGGGAGATCCTGGTCAGACCTTTGGTGCCGACCCTTAG
CCACTTGCCTCTACACAGAATGTGGAGGTCGGTTGGAGGGTTACACGCCCACCTAGCTGC
CCCAGAAGGCAGCCAATCCTTGCTTCGCTTCTGTAGAATTTGTTTTATGGCTGGCATCTG
GGGGGTTGCAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAATCATGGTACCTGTAGGGCTTGTATTTGTGGTCTTTGCCCTGCATTTCTACCGCTCCT
TGGTGGCACACAAGACAGACCGCCACAAGCAAGAGCTAGAGGAGCTGAGTCGCCTGCAGG
GGGAGCTGCAGGCTGTGTAAGGCTGGTGTTAGCCACACTGCAAGCACTGCCTCCTTCAGG
GGTCTGACTGAGGCCTCAGGTCTACAGACCCCATTCCCTGCCCCTGCCTGGAGCTACTTC
CTGTGGCCACTCAGGTAGAGAACAGATTTCTGCCCTCAGGGCCCTTTGGGCTGGGCCTTG
GGGTGGCTCCCACATTCCCAGGGATTCTCCCTGTCACTCTGTCCCATGGGTTTTGTAAGC
TCTACTGTGCACTTGGGCTGGGAGGAGCAAAGGAAGAGGAAGGTCCTCAGTCCAAGGCTG
ATGCTGTAGGTAGAGGGGAAGCAGGGAGATCCTGGTCAGACCTTTGGTGCCGACCCTTAG
CCACTTGCCTCTACACAGAATGTGGAGGTCGGTTGGAGGGTTACACGCCCACCTAGCTGC
CCCAGAAGGCAGCCAATCCTTGCTTCGCTTCTGTAGAATTTGTTTTATGGCTGGCATCTG
GGGGGTTGCAGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               155-383, + strand, RNAz p=0.999065

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               155-383, + strand, RNAz p=0.999065

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               155-383, CJ035457 full-length enriched swine cDNA library, adult testis Sus 
(dbj|CJ035457.1|), blast E-value=0, identity=99.56% 
               

               
               229-366, 972899 BARC 5BOV Bos taurus cDNA 3', mRNA sequence (gb|CK849772.1|), 
blast E-value=1e-27, identity=87.94% 
               

               
               229-366, 1316692 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN528167.1|), 
blast E-value=1e-27, identity=87.94% 
               

               
               229-366, 1318228 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN529564.1|), 
blast E-value=1e-27, identity=87.94% 
               

               
               229-366, 1386636 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN540726.1|), 
blast E-value=1e-27, identity=87.94% 
               

               
               229-366, 000924BEMN022862HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY205694.1|), blast E-value=1e-27, identity=87.94%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               155-383, CJ035457 full-length enriched swine cDNA library, adult testis Sus 
(dbj|CJ035457.1|), blast E-value=0, identity=99.56% 
               

               
               229-366, 972899 BARC 5BOV Bos taurus cDNA 3', mRNA sequence (gb|CK849772.1|), 
blast E-value=1e-27, identity=87.94% 
               

               
               229-366, 1316692 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN528167.1|), 
blast E-value=1e-27, identity=87.94% 
               

               
               229-366, 1318228 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN529564.1|), 
blast E-value=1e-27, identity=87.94% 
               

               
               229-366, 1386636 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb|DN540726.1|), 
blast E-value=1e-27, identity=87.94% 
               

               
               229-366, 000924BEMN022862HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY205694.1|), blast E-value=1e-27, identity=87.94%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_152288, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_152288, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-595, gnl|bosTau2|chr25 (22856358-22856953)
               

               
               1-595, gnl|Hg17|chr16 (30872527-30873348)
               

               
               1-595, gnl|Mm7|chr7 (123870620-123871133)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-595, gnl|bosTau2|chr25 (22856358-22856953)
               

               
               1-595, gnl|Hg17|chr16 (30872527-30873348)
               

               
               1-595, gnl|Mm7|chr7 (123870620-123871133)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               cly (0.241284)
               

               
               lnt (0.142308)
               

               
               cov (0.132153)
               

               
               med (0.116252)
               

               
               jca (0.11396)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (0.241284)
               

               
               lnt (0.142308)
               

               
               cov (0.132153)
               

               
               med (0.116252)
               

               
               jca (0.11396)

	155-383, CJ035457 full-length enriched swine cDNA library, adult testis Sus (dbj\|CJ035457.1\|), blast E-value=0, identity=99.56%
	229-366, 972899 BARC 5BOV Bos taurus cDNA 3', mRNA sequence (gb\|CK849772.1\|), blast E-value=1e-27, identity=87.94%
	229-366, 1316692 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN528167.1\|), blast E-value=1e-27, identity=87.94%
	229-366, 1318228 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb\|DN529564.1\|), blast E-value=1e-27, identity=87.94%
	229-366, 1386636 MARC 7BOV Bos taurus cDNA 3', mRNA sequence (gb\|DN540726.1\|), blast E-value=1e-27, identity=87.94%
	229-366, 000924BEMN022862HT BEMN Bos taurus cDNA, mRNA sequence (gb\|DY205694.1\|), blast E-value=1e-27, identity=87.94%

	1-595, gnl\|bosTau2\|chr25 (22856358-22856953)
	1-595, gnl\|Hg17\|chr16 (30872527-30873348)
	1-595, gnl\|Mm7\|chr7 (123870620-123871133)

	cly (0.241284)
	lnt (0.142308)
	cov (0.132153)
	med (0.116252)
	jca (0.11396)