Non-Coding RNA Search

Ss1.1-Pig2-109H16.5

Sequence:


               
               CGAGGAGGGGGCGGGGCTGGGGGCGGAGCCGCAGGGCGCGGCCCGGACAGTCGGTCTCCC
GGCCGGAGGGAGCCACGACGCCGGCCATGGAGGCTGGGGGCTTCCGCTACCAGTTTCGGA
TCGCGCTGCTGGGGGACACGGCTGTGGGCAAGACGTCGTTGCTGCGGCGCTACGTGGCGG
ACGCGCCTTGGATACCAGAGCCCGAGCCGGAGCTCGAGTCGGCGCCCACGGTGGGCGTCG
AGTTCTACAGCCGCACTCTACAGCTGCGGGCCGGGCCGCGCGTCAAGCTGCAGCTTTGGG
ACACTGCGGGCCAGGAGCGCTTCAGGTGCATTACCAGGTCCTTTTACCGGAATGTGGTGG
GTGTCCTGCTGGTCTTTGATGTGACAAACAGGAAGTCCTTTGAACATATCCGAGACTGGC
ACCAGGAGGTCATGGCCACTCAGGGCCCCGACAAGGCGATCTTCCTGCTGGTTGGCCACA
AGAGTGACCTGCAGAGCATGCGATGTGTCTCAGCCCAGGAGGCGGAAGAGCTGGCTGCCT
CCCTGGGCATGGCCTTCGTGGAGACCTCCGCCAAAAATAACTGCAATGTGGATCTGGCCT
TCAACACCGTTGCTGATGCCATCCAGCAGGCCCTGCAGCAGGGGGACATCAAGCTGGAGG
AGGACTGGGGGGGTGTCCGGCTCATCAACACCCAACCCCCCAGGCCCCTCAGCAGGAAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAGGAGGGGGCGGGGCTGGGGGCGGAGCCGCAGGGCGCGGCCCGGACAGTCGGTCTCCC
GGCCGGAGGGAGCCACGACGCCGGCCATGGAGGCTGGGGGCTTCCGCTACCAGTTTCGGA
TCGCGCTGCTGGGGGACACGGCTGTGGGCAAGACGTCGTTGCTGCGGCGCTACGTGGCGG
ACGCGCCTTGGATACCAGAGCCCGAGCCGGAGCTCGAGTCGGCGCCCACGGTGGGCGTCG
AGTTCTACAGCCGCACTCTACAGCTGCGGGCCGGGCCGCGCGTCAAGCTGCAGCTTTGGG
ACACTGCGGGCCAGGAGCGCTTCAGGTGCATTACCAGGTCCTTTTACCGGAATGTGGTGG
GTGTCCTGCTGGTCTTTGATGTGACAAACAGGAAGTCCTTTGAACATATCCGAGACTGGC
ACCAGGAGGTCATGGCCACTCAGGGCCCCGACAAGGCGATCTTCCTGCTGGTTGGCCACA
AGAGTGACCTGCAGAGCATGCGATGTGTCTCAGCCCAGGAGGCGGAAGAGCTGGCTGCCT
CCCTGGGCATGGCCTTCGTGGAGACCTCCGCCAAAAATAACTGCAATGTGGATCTGGCCT
TCAACACCGTTGCTGATGCCATCCAGCAGGCCCTGCAGCAGGGGGACATCAAGCTGGAGG
AGGACTGGGGGGGTGTCCGGCTCATCAACACCCAACCCCCCAGGCCCCTCAGCAGGAAGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8N4Z0_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8N4Z0_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               323-481, + strand, RNAz p=0.936421

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               323-481, + strand, RNAz p=0.936421

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_152304, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_152304, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               323-720, gnl|bosTau2|chr2 (76788483-76788883)
               

               
               323-720, gnl|Hg17|chr1 (28740819-28741219)
               

               
               323-720, gnl|Mm7|chr4 (131517104-131516707)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               323-720, gnl|bosTau2|chr2 (76788483-76788883)
               

               
               323-720, gnl|Hg17|chr1 (28740819-28741219)
               

               
               323-720, gnl|Mm7|chr4 (131517104-131516707)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nlu (0.191681)
               

               
               cov (0.132153)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nlu (0.191681)
               

               
               cov (0.132153)

	323-720, gnl\|bosTau2\|chr2 (76788483-76788883)
	323-720, gnl\|Hg17\|chr1 (28740819-28741219)
	323-720, gnl\|Mm7\|chr4 (131517104-131516707)