Ss1.1-Pig2-109K17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGACACTATGGCGCACGTCGGAGGCCTGTGGCTTCCTGGCTGCTTGGCCCTGGCTGTCCT CGTTAGCCTTGTGCACAGCCAGCATGTGTTCATGGCCCCTCAACAAGCACTGTCGCTGCT CCAGCGGGCCCGACGCGCTAACAGCGGCTTCTTCGAGGAGATGCGGAAGGGCAACCTGGA GCGAGAGTGCGTGGAGGAGCAGTGCAGCCGCGAGGAGGCCTACGAGGCCCTGGAGTCTCC CAGTGAAACGGATGCATTCTGGGCCAAGTACACAGCTTGTGAGTCAGTGAGGAAATCTCG AGAAAAGCTGGTTGAATGTCTGGAAGGTAACTGTGCTGAAGGTCTGGGTATGAACTACCG AGGGAACATAAGCGTCACCCGGTCAGGCATTGAGTGCCAGCTCTGGAGGAGTCGCTACCC ACATAAGCCAGAAGTCAACTCCACCATGTACCCTGGGGCTGACCTGAGGGAGAATTTTTG CCGCAACCCAGATGGCAGCATCACTGGGCCCTGGTGCTACACCACGTCCCCTACCGTGAG GAGGGAGGCGTGCAGCATCCCTGTCTGTGGCCAGGGGCGAGTCACTGCGGAGCTGATCCC ACGCTCTGGAGGCTCCACAGTGAATGTGTCACCTCCACTGGAAACGTGCGTCCCCGAGCG GGGCCGGCAGTACCAGGGGCGCCTGGCGGTGACCTCACATGGGTCCCCCTGCCTGGCCTG GGGCAGCAGTCAGGCCAAGGCCCTGAGCAAGGACCGGGACTTCAACCCGGCGGTGCCACT GGTGGAGAACTTCTGCCGCAACCCAGACGGGGACCAGGAGGGCGCGTGGTGTTACGTGGC GGGACAGCCTGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGACACTATGGCGCACGTCGGAGGCCTGTGGCTTCCTGGCTGCTTGGCCCTGGCTGTCCT CGTTAGCCTTGTGCACAGCCAGCATGTGTTCATGGCCCCTCAACAAGCACTGTCGCTGCT CCAGCGGGCCCGACGCGCTAACAGCGGCTTCTTCGAGGAGATGCGGAAGGGCAACCTGGA GCGAGAGTGCGTGGAGGAGCAGTGCAGCCGCGAGGAGGCCTACGAGGCCCTGGAGTCTCC CAGTGAAACGGATGCATTCTGGGCCAAGTACACAGCTTGTGAGTCAGTGAGGAAATCTCG AGAAAAGCTGGTTGAATGTCTGGAAGGTAACTGTGCTGAAGGTCTGGGTATGAACTACCG AGGGAACATAAGCGTCACCCGGTCAGGCATTGAGTGCCAGCTCTGGAGGAGTCGCTACCC ACATAAGCCAGAAGTCAACTCCACCATGTACCCTGGGGCTGACCTGAGGGAGAATTTTTG CCGCAACCCAGATGGCAGCATCACTGGGCCCTGGTGCTACACCACGTCCCCTACCGTGAG GAGGGAGGCGTGCAGCATCCCTGTCTGTGGCCAGGGGCGAGTCACTGCGGAGCTGATCCC ACGCTCTGGAGGCTCCACAGTGAATGTGTCACCTCCACTGGAAACGTGCGTCCCCGAGCG GGGCCGGCAGTACCAGGGGCGCCTGGCGGTGACCTCACATGGGTCCCCCTGCCTGGCCTG GGGCAGCAGTCAGGCCAAGGCCCTGAGCAAGGACCGGGACTTCAACCCGGCGGTGCCACT GGTGGAGAACTTCTGCCGCAACCCAGACGGGGACCAGGAGGGCGCGTGGTGTTACGTGGC GGGACAGCCTGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 117-236, - strand, RNAz p=0.793334 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 117-236, - strand, RNAz p=0.793334 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 79-251, gnl|bosTau2|chr15 (48479229-48479400) | |
| 79-251, gnl|canFam2|chr22 (63966656-63966451) | |
| 79-251, gnl|danRer3|chrUn (104768776-104768946) | |
| 79-251, gnl|dasNov1|scaffold_21165 (40703-40876) | |
| 79-251, gnl|echTel1|scaffold_235980 (2925-3098) | |
| 79-251, gnl|fr1|chrUn (162977089-162977249) | |
| 79-251, gnl|Hg17|chr11 (46697821-46697989) | |
| 79-251, gnl|hg17|chr13 (113547228-113547401) | |
| 79-251, gnl|loxAfr1|scaffold_8268 (69349-69176) | |
| 79-251, gnl|Mm7|chr2 (91486666-91486493) | |
| 79-251, gnl|mm7|chr8 (13468235-13468062) | |
| 79-251, gnl|monDom2|scaffold_11 (31123525-31123698) | |
| 79-251, gnl|oryCun1|scaffold_194710 (8143-7958) | |
| 79-251, gnl|panTro1|chr14_random (3411479-3411306) | |
| 79-251, gnl|rheMac2|chr17 (93997310-93997148) | |
| 79-251, gnl|rn3|chr16 (80900870-80901043) | |
| 79-251, gnl|tetNig1|chr5 (8251763-8251913) | |
| 79-251, gnl|xenTro1|scaffold_343 (363856-363683) | |
| 325-432, gnl|bosTau2|chr15 (48481694-48481801) | |
| 325-432, gnl|canFam2|chr18 (45830384-45830257) | |
| 325-432, gnl|echTel1|scaffold_318661 (12667-12540) | |
| 325-432, gnl|fr1|chrUn (171914187-171914087) | |
| 325-432, gnl|galGal2|chr5 (20731140-20731013) | |
| 325-432, gnl|hg17|chr11 (46701304-46701431) | |
| 325-432, gnl|Hg17|chr11 (46701304-46701411) | |
| 325-432, gnl|loxAfr1|scaffold_28476 (13381-13261) | |
| 325-432, gnl|mm7|chr2 (91484016-91483890) | |
| 325-432, gnl|Mm7|chr2 (91484014-91483907) | |
| 325-432, gnl|monDom2|scaffold_33 (12691357-12691480) | |
| 325-432, gnl|oryCun1|scaffold_194710 (6126-6000) | |
| 325-432, gnl|panTro1|chr9 (47221560-47221687) | |
| 325-432, gnl|rheMac2|chr14 (25394682-25394555) | |
| 325-432, gnl|rn3|chr3 (75911556-75911430) | |
| 325-432, gnl|tetNig1|chr3 (1187397-1187297) | |
| 325-432, gnl|xenTro1|scaffold_76 (2215882-2215996) | |
| 569-852, gnl|bosTau2|chr15 (48483245-48483528) | |
| 569-852, gnl|Hg17|chr11 (46703984-46704267) | |
| 569-852, gnl|Mm7|chr2 (91481543-91481257) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 79-251, gnl|bosTau2|chr15 (48479229-48479400) | |
| 79-251, gnl|canFam2|chr22 (63966656-63966451) | |
| 79-251, gnl|danRer3|chrUn (104768776-104768946) | |
| 79-251, gnl|dasNov1|scaffold_21165 (40703-40876) | |
| 79-251, gnl|echTel1|scaffold_235980 (2925-3098) | |
| 79-251, gnl|fr1|chrUn (162977089-162977249) | |
| 79-251, gnl|Hg17|chr11 (46697821-46697989) | |
| 79-251, gnl|hg17|chr13 (113547228-113547401) | |
| 79-251, gnl|loxAfr1|scaffold_8268 (69349-69176) | |
| 79-251, gnl|Mm7|chr2 (91486666-91486493) | |
| 79-251, gnl|mm7|chr8 (13468235-13468062) | |
| 79-251, gnl|monDom2|scaffold_11 (31123525-31123698) | |
| 79-251, gnl|oryCun1|scaffold_194710 (8143-7958) | |
| 79-251, gnl|panTro1|chr14_random (3411479-3411306) | |
| 79-251, gnl|rheMac2|chr17 (93997310-93997148) | |
| 79-251, gnl|rn3|chr16 (80900870-80901043) | |
| 79-251, gnl|tetNig1|chr5 (8251763-8251913) | |
| 79-251, gnl|xenTro1|scaffold_343 (363856-363683) | |
| 325-432, gnl|bosTau2|chr15 (48481694-48481801) | |
| 325-432, gnl|canFam2|chr18 (45830384-45830257) | |
| 325-432, gnl|echTel1|scaffold_318661 (12667-12540) | |
| 325-432, gnl|fr1|chrUn (171914187-171914087) | |
| 325-432, gnl|galGal2|chr5 (20731140-20731013) | |
| 325-432, gnl|hg17|chr11 (46701304-46701431) | |
| 325-432, gnl|Hg17|chr11 (46701304-46701411) | |
| 325-432, gnl|loxAfr1|scaffold_28476 (13381-13261) | |
| 325-432, gnl|mm7|chr2 (91484016-91483890) | |
| 325-432, gnl|Mm7|chr2 (91484014-91483907) | |
| 325-432, gnl|monDom2|scaffold_33 (12691357-12691480) | |
| 325-432, gnl|oryCun1|scaffold_194710 (6126-6000) | |
| 325-432, gnl|panTro1|chr9 (47221560-47221687) | |
| 325-432, gnl|rheMac2|chr14 (25394682-25394555) | |
| 325-432, gnl|rn3|chr3 (75911556-75911430) | |
| 325-432, gnl|tetNig1|chr3 (1187397-1187297) | |
| 325-432, gnl|xenTro1|scaffold_76 (2215882-2215996) | |
| 569-852, gnl|bosTau2|chr15 (48483245-48483528) | |
| 569-852, gnl|Hg17|chr11 (46703984-46704267) | |
| 569-852, gnl|Mm7|chr2 (91481543-91481257) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (0.152812) |