Non-Coding RNA Search

Ss1.1-Pig2-109N11.5

Sequence:


               
               CCCCTTTTGAATCAACTGGAATGATTGGCTTCCGAAGGCGGGGGGCGGTGGAGGGCCCAN
CTCACAGAATGGCAGGTGGAGTCCTGGCTGGGGCTTGCCTGACTCCGAGGCTCTCCTGCA
GGGGCCACGCCTTTTCTGCACTCTGACCCTGGGCAGCGGGGCTCATCAGTGGAAGCAGAT
TTCATGACTCACGTCCCCTCTTCCCGTCCTCTTGGCCTGCTCCCTGTGGGAAGTCATCCT
GCCTCCTGCCAACTGATGGTTAAATCAGCTGGCTCTTTAGCTGGCTGTTGCCAACTTTAA
TTTACAGGGATAAGTTCCTTGTGAGATGTTTTGCCACTGCCTGGGGTGACTGGCAGTTTG
AAGGGGACCTTTGACCTCCTTGTAGCATCTGGCACCTTGTGGAGACCACCTCAGCGCAAG
CCCTGCTTGGCTTGTGTTAGAGCAAAGAGCCAGGACCCCGATGCCCCGGCAGTGTGGTTG
GGCAAGGAGAGGGGCTGATACACCCAGACCTCCAGCCACCAGCCCCTGGCCTGTGCCTTC
CAACCCATTAGCCGTCTCTTGTGCTCCTTTCCAAGACACACAGCCTGCAAGTAGCGGCTA
GGCGTGGTGGTTAGACGCCCATCTGGACTTGGCAGCAGAAGTAATTTCCTGTTGCCATTG
TCGGGGTCTGAATTTCATGATGCTGTATTGTGGATTTTTGTGGTGGTGGTGGTGGTGATG
GGTACTGGTGCTGCCAGCTTCCCCCAGATGATGGAGCCTCTGGTCACGTGGCTGTCCGTG
TGGGCATTCCTCAGCTGTGCTCAGCCAGGCGGCCTGGGGAGGATTGGGCTGTGGAATTGT
CAGCAGCAGCCCACATCCAGGCCTGTATGGAACGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCTTTTGAATCAACTGGAATGATTGGCTTCCGAAGGCGGGGGGCGGTGGAGGGCCCAN
CTCACAGAATGGCAGGTGGAGTCCTGGCTGGGGCTTGCCTGACTCCGAGGCTCTCCTGCA
GGGGCCACGCCTTTTCTGCACTCTGACCCTGGGCAGCGGGGCTCATCAGTGGAAGCAGAT
TTCATGACTCACGTCCCCTCTTCCCGTCCTCTTGGCCTGCTCCCTGTGGGAAGTCATCCT
GCCTCCTGCCAACTGATGGTTAAATCAGCTGGCTCTTTAGCTGGCTGTTGCCAACTTTAA
TTTACAGGGATAAGTTCCTTGTGAGATGTTTTGCCACTGCCTGGGGTGACTGGCAGTTTG
AAGGGGACCTTTGACCTCCTTGTAGCATCTGGCACCTTGTGGAGACCACCTCAGCGCAAG
CCCTGCTTGGCTTGTGTTAGAGCAAAGAGCCAGGACCCCGATGCCCCGGCAGTGTGGTTG
GGCAAGGAGAGGGGCTGATACACCCAGACCTCCAGCCACCAGCCCCTGGCCTGTGCCTTC
CAACCCATTAGCCGTCTCTTGTGCTCCTTTCCAAGACACACAGCCTGCAAGTAGCGGCTA
GGCGTGGTGGTTAGACGCCCATCTGGACTTGGCAGCAGAAGTAATTTCCTGTTGCCATTG
TCGGGGTCTGAATTTCATGATGCTGTATTGTGGATTTTTGTGGTGGTGGTGGTGGTGATG
GGTACTGGTGCTGCCAGCTTCCCCCAGATGATGGAGCCTCTGGTCACGTGGCTGTCCGTG
TGGGCATTCCTCAGCTGTGCTCAGCCAGGCGGCCTGGGGAGGATTGGGCTGTGGAATTGT
CAGCAGCAGCCCACATCCAGGCCTGTATGGAACGTT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               185-381, - strand, RNAz p=0.997327
               

               
               419-840, + strand, RNAz p=0.999842

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               185-381, - strand, RNAz p=0.997327
               

               
               419-840, + strand, RNAz p=0.999842

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               616-709, + strand, RNAmicro p=0.990783

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               616-709, + strand, RNAmicro p=0.990783

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               502-699, 35280 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb|AW352972.1|), 
blast E-value=2e-24, identity=83.92% 
               

               
               502-699, 96044 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb|AW659110.1|), 
blast E-value=2e-24, identity=83.92% 
               

               
               502-699, 277802 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BF653839.1|), 
blast E-value=2e-24, identity=83.92% 
               

               
               502-699, LB0254.CR_I20 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|DV869919.1|), 
blast E-value=2e-24, identity=83.92% 
               

               
               502-699, LB02824.CR_J21 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV912603.1|), 
blast E-value=2e-24, identity=83.92% 
               

               
               502-699, LB03073.CR_I05 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE383670.1|), 
blast E-value=2e-24, identity=83.92%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               502-699, 35280 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb|AW352972.1|), 
blast E-value=2e-24, identity=83.92% 
               

               
               502-699, 96044 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb|AW659110.1|), 
blast E-value=2e-24, identity=83.92% 
               

               
               502-699, 277802 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BF653839.1|), 
blast E-value=2e-24, identity=83.92% 
               

               
               502-699, LB0254.CR_I20 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|DV869919.1|), 
blast E-value=2e-24, identity=83.92% 
               

               
               502-699, LB02824.CR_J21 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb|DV912603.1|), 
blast E-value=2e-24, identity=83.92% 
               

               
               502-699, LB03073.CR_I05 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb|EE383670.1|), 
blast E-value=2e-24, identity=83.92%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_021079, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_021079, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               67-876, gnl|bosTau2|chr19 (37238626-37237832)
               

               
               67-876, gnl|Hg17|chr17 (40539146-40539914)
               

               
               67-876, gnl|Mm7|chr11 (103175440-103176178)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               67-876, gnl|bosTau2|chr19 (37238626-37237832)
               

               
               67-876, gnl|Hg17|chr17 (40539146-40539914)
               

               
               67-876, gnl|Mm7|chr11 (103175440-103176178)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eep (0.122564)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)
               

               
               ebs (0.118301)

	185-381, - strand, RNAz p=0.997327
	419-840, + strand, RNAz p=0.999842

	502-699, 35280 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb\|AW352972.1\|), blast E-value=2e-24, identity=83.92%
	502-699, 96044 MARC 1BOV Bos taurus cDNA 5', mRNA sequence (gb\|AW659110.1\|), blast E-value=2e-24, identity=83.92%
	502-699, 277802 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb\|BF653839.1\|), blast E-value=2e-24, identity=83.92%
	502-699, LB0254.CR_I20 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb\|DV869919.1\|), blast E-value=2e-24, identity=83.92%
	502-699, LB02824.CR_J21 GC_BGC-28 Bos taurus cDNA clone IMAGE (gb\|DV912603.1\|), blast E-value=2e-24, identity=83.92%
	502-699, LB03073.CR_I05 GC_BGC-30 Bos taurus cDNA clone IMAGE (gb\|EE383670.1\|), blast E-value=2e-24, identity=83.92%

	67-876, gnl\|bosTau2\|chr19 (37238626-37237832)
	67-876, gnl\|Hg17\|chr17 (40539146-40539914)
	67-876, gnl\|Mm7\|chr11 (103175440-103176178)