Ss1.1-Pig2-10I07.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATGGGCCAGATGCCATGATCCTCGTGGACGGCCAGCCACGCCAGGCGAAAGGCGAGCTGG GGCTCTCCCAGATGCTGCACATTGCCAGTCAGATTGCCTCTGGCATGGTGTACCTGGCCT CCCAGCATTTTGTGCACCGGGACCTGGCCACCAGGAACTGCCTGGTTGGAGCCAACCTGC TGGTGAAGATTGGCGATTTCGGCATGTCCAGAGATGTCTACAGCACGGATTACTACAGGG TAGGAGGACACACCATGCTCCCAATTCGCTGGATGCCTCCTGAAAGCATCATGTACCGGA AGTTCACTACTGAGAGTGACGTGTGGAGCTTCGGGGTGATCCTCTGGGAGATCTTCACCT ACGGAAAGCAGCCATGGTTCCAACTCTCAAACACAGAGGTCATTGAGTGCATCACCCAAG GTCGCGTTTTGGAACGGCCCCGGGTCTGCCCCAAAGAGGTGTATGATGTCATGCTGGGGT GCTGGCAGAGGGAACCGCAGCAGCGGCTGAACATCAAGGAAATCTACAAAATCCTCCATG CTTTGGGGAAAGCCACCCCCATCTACCTGGACATCC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATGGGCCAGATGCCATGATCCTCGTGGACGGCCAGCCACGCCAGGCGAAAGGCGAGCTGG GGCTCTCCCAGATGCTGCACATTGCCAGTCAGATTGCCTCTGGCATGGTGTACCTGGCCT CCCAGCATTTTGTGCACCGGGACCTGGCCACCAGGAACTGCCTGGTTGGAGCCAACCTGC TGGTGAAGATTGGCGATTTCGGCATGTCCAGAGATGTCTACAGCACGGATTACTACAGGG TAGGAGGACACACCATGCTCCCAATTCGCTGGATGCCTCCTGAAAGCATCATGTACCGGA AGTTCACTACTGAGAGTGACGTGTGGAGCTTCGGGGTGATCCTCTGGGAGATCTTCACCT ACGGAAAGCAGCCATGGTTCCAACTCTCAAACACAGAGGTCATTGAGTGCATCACCCAAG GTCGCGTTTTGGAACGGCCCCGGGTCTGCCCCAAAGAGGTGTATGATGTCATGCTGGGGT GCTGGCAGAGGGAACCGCAGCAGCGGCTGAACATCAAGGAAATCTACAAAATCCTCCATG CTTTGGGGAAAGCCACCCCCATCTACCTGGACATCC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1-200, + strand, RNAz p=0.989163 | |
| 459-576, - strand, RNAz p=0.610813 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-200, + strand, RNAz p=0.989163 | |
| 459-576, - strand, RNAz p=0.610813 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 1-247, gnl|bosTau2|chr21 (13987335-13987089) | |
| 1-247, gnl|canFam2|chr3 (54046926-54047178) | |
| 1-247, gnl|danRer3|chr7 (5597183-5596933) | |
| 1-247, gnl|dasNov1|scaffold_15699 (86104-86345) | |
| 1-247, gnl|echTel1|scaffold_316722 (83598-83850) | |
| 1-247, gnl|fr1|chrUn (108905321-108905570) | |
| 1-247, gnl|galGal2|chr10 (13934982-13934732) | |
| 1-247, gnl|hg17|chr15 (86273421-86273673) | |
| 1-247, gnl|Hg17|chr15 (86273664-86273418) | |
| 1-247, gnl|loxAfr1|scaffold_3485 (11526-11274) | |
| 1-247, gnl|mm7|chr7 (74107676-74107928) | |
| 1-247, gnl|Mm7|chr7 (74107919-74107673) | |
| 1-247, gnl|monDom2|scaffold_45 (12716262-12716010) | |
| 1-247, gnl|oryCun1|scaffold_214357 (168469-168228) | |
| 1-247, gnl|panTro1|chr16 (87118772-87119024) | |
| 1-247, gnl|rheMac2|chr7 (67542906-67543158) | |
| 1-247, gnl|rn3|chr1 (134056782-134057034) | |
| 1-247, gnl|tetNig1|chrUn_random (136695549-136695300) | |
| 1-247, gnl|xenTro1|scaffold_71 (500517-500265) | |
| 397-576, gnl|bosTau2|chr21 (13940108-13939929) | |
| 397-576, gnl|canFam2|chr3 (54000106-54000300) | |
| 397-576, gnl|danRer3|chr7 (5618800-5618599) | |
| 397-576, gnl|dasNov1|scaffold_386 (104608-104402) | |
| 397-576, gnl|echTel1|scaffold_308694 (42218-42024) | |
| 397-576, gnl|fr1|chrUn (108893651-108893858) | |
| 397-576, gnl|galGal2|chr10 (13962577-13962371) | |
| 397-576, gnl|hg17|chr15 (86221159-86221365) | |
| 397-576, gnl|Hg17|chr15 (86221357-86221178) | |
| 397-576, gnl|loxAfr1|scaffold_75104 (4978-5184) | |
| 397-576, gnl|mm7|chr7 (74053074-74053280) | |
| 397-576, gnl|Mm7|chr7 (74053272-74053093) | |
| 397-576, gnl|monDom2|scaffold_45 (12770754-12770558) | |
| 397-576, gnl|oryCun1|scaffold_177337 (54457-54654) | |
| 397-576, gnl|panTro1|chr16 (87066313-87066519) | |
| 397-576, gnl|rheMac2|chr7 (67490574-67490780) | |
| 397-576, gnl|rn3|chr1 (134004015-134004221) | |
| 397-576, gnl|tetNig1|chrUn_random (136706920-136706717) | |
| 397-576, gnl|xenTro1|scaffold_71 (510030-509832) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-247, gnl|bosTau2|chr21 (13987335-13987089) | |
| 1-247, gnl|canFam2|chr3 (54046926-54047178) | |
| 1-247, gnl|danRer3|chr7 (5597183-5596933) | |
| 1-247, gnl|dasNov1|scaffold_15699 (86104-86345) | |
| 1-247, gnl|echTel1|scaffold_316722 (83598-83850) | |
| 1-247, gnl|fr1|chrUn (108905321-108905570) | |
| 1-247, gnl|galGal2|chr10 (13934982-13934732) | |
| 1-247, gnl|hg17|chr15 (86273421-86273673) | |
| 1-247, gnl|Hg17|chr15 (86273664-86273418) | |
| 1-247, gnl|loxAfr1|scaffold_3485 (11526-11274) | |
| 1-247, gnl|mm7|chr7 (74107676-74107928) | |
| 1-247, gnl|Mm7|chr7 (74107919-74107673) | |
| 1-247, gnl|monDom2|scaffold_45 (12716262-12716010) | |
| 1-247, gnl|oryCun1|scaffold_214357 (168469-168228) | |
| 1-247, gnl|panTro1|chr16 (87118772-87119024) | |
| 1-247, gnl|rheMac2|chr7 (67542906-67543158) | |
| 1-247, gnl|rn3|chr1 (134056782-134057034) | |
| 1-247, gnl|tetNig1|chrUn_random (136695549-136695300) | |
| 1-247, gnl|xenTro1|scaffold_71 (500517-500265) | |
| 397-576, gnl|bosTau2|chr21 (13940108-13939929) | |
| 397-576, gnl|canFam2|chr3 (54000106-54000300) | |
| 397-576, gnl|danRer3|chr7 (5618800-5618599) | |
| 397-576, gnl|dasNov1|scaffold_386 (104608-104402) | |
| 397-576, gnl|echTel1|scaffold_308694 (42218-42024) | |
| 397-576, gnl|fr1|chrUn (108893651-108893858) | |
| 397-576, gnl|galGal2|chr10 (13962577-13962371) | |
| 397-576, gnl|hg17|chr15 (86221159-86221365) | |
| 397-576, gnl|Hg17|chr15 (86221357-86221178) | |
| 397-576, gnl|loxAfr1|scaffold_75104 (4978-5184) | |
| 397-576, gnl|mm7|chr7 (74053074-74053280) | |
| 397-576, gnl|Mm7|chr7 (74053272-74053093) | |
| 397-576, gnl|monDom2|scaffold_45 (12770754-12770558) | |
| 397-576, gnl|oryCun1|scaffold_177337 (54457-54654) | |
| 397-576, gnl|panTro1|chr16 (87066313-87066519) | |
| 397-576, gnl|rheMac2|chr7 (67490574-67490780) | |
| 397-576, gnl|rn3|chr1 (134004015-134004221) | |
| 397-576, gnl|tetNig1|chrUn_random (136706920-136706717) | |
| 397-576, gnl|xenTro1|scaffold_71 (510030-509832) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (0.165235) | |
| hyp (0.142837) |