Non-Coding RNA Search

Ss1.1-Pig2-110D04.5

Sequence:


               
               CCGCTGCCCGAGTCTCTCCCTAACCCGCCCTCAGGTCCTGCTGGAGAGTTCCGGAGGCGG
CGGCCTCGGCGGCAGCGGGGACCGGCGTCCCGGGCCCTGACCGCGCCCGTCTCCCGCACA
GAGCTCGCAGGCGCCCCGACGGTCCCGGGAGCCGCGGCCTCCAGCGTGCCCGGCCTCCAC
CTGGAGCGCCAGCTCCCCGAATGCACTTTACCAGGGTTCCTCCCTGAGCCCCCACAGGAT
GGCGGATGGAGGAAGCCCCTTCCTAGGTTGTAGAGACTTTGTCTACCCTTCCTCAACCCG
AGACCCTAGTGCCTCGGAACGAGGGGCCAGCCCAGCCAGGAAGGAAGAGAAGAAGAGGAA
GGCCGCCAGGCTCAAGTTTGACTTCCAGGCACAGTCCCCTAAGGAGCTGACTCTGAAGAA
GGGTGACATTGTCTACATCCACAAAGAGGTGGACAAGAACTGGCTGGAGGGGGAGCACCA
TGGCGGGCTGGGTATCTTCCCTGCTAATTACGTGGAGGTGCTGCCTGCAGATGAGATCCC
CAAGCCCATCAAGCCTCCAACCTACCAGGTGCTGGAGTATGGAGAAGCTGTGGCCCAGTA
CAACTTCAAGGGGGATCTGGAGGTTGAACTTTCCTTCCGAAAGGGGGAGCGCATCTGCCT
GATCCGCAAGGTGAATGAGCACTGGTACGAGGGCCGTATCTCCGGCACCGGACGCCAGGG
CATCTTCCCTGCCAGCTACGTGCAGGTGAGCCGGGAGCCCCGGCTCCGGCTCTGCGAAGA
TGGCCCCCAGCTGCCTGCGTCCCCCCGCCTGAATGCCACCCGCCTGGCCCATCACCACAG
CTCCCCGTTAACGCCGCACAGCCCAGCTGACCCCACCGACTGGGGTGGCCGGACCTCCCC
CCGCCGCACTGGCTTCTCCTTCCCTGCCCAGGAGCCCAGACCCCAGACTCAGAGTCTCAG
CACCCCTGGGTCAGCTCTGTCCCATCCCGGAGTCTCCAGCCGTCCCCTGGACCAGGGGAC
CTCTTCCCTCAACACCACTCAGATACACTGGACCCCGTACCGGGCGATGTACCAGTACAG
GCCCCAGAACGAGGATGAGCTGGAGCTGCGGGAGGGGGACCGGGTGGATGTCATGCAGCA
GTGTGACGATGGCTGGTTTGTGGGTGTCTCCCGGAGGACTCAGAAATTTGGGACATTCCC
TGGAAATTACGTAGCCCCGGTGTGAGTGGTCTCCGTGGCAACACAGAGCCCAGCCAGGAT
GGGGCGGGGAGCAGTAGCACTTATGGGAGGGAGAGAGGACCCCTCTCTCCCACATCCTCC
TCCCCCAGGACCTGAGCTGCTGGCATCTGCTGACAACCCCGGCAGCCTTTCCCGCGGAAC
CTCCCTCAAAGCCCCCTGGACTGATTCCCACCCACCACTCACACGCATTCCTCTAACAGC
CGTTTTATTTCCTGCCCTACCCCACTCCCCAAATATAGAGGTCTGCTTTGAAGTGGAAAC
TGTTTCCCGGCCTTATTGAGACCAGACCCCCCTCACCCCACCCTGCTATGGCGTTTCCTC
TAACAGGGATCGGCTCCCAGCTTCACCCCCGTGGGGTTCCTCTAACAAGGACCAGCTTCC
TAACCAAAGGCCGCCTGTGCCCAGAGGGGATTCCTCCCCTTTCTCTCCAGCTTGCCTGCT
GCAGTCCCCTTTGCCTTCCTGCCTCCAGCTGAGCCTGGGAGCGAAGTGGGGGATGGATGC
AGCACTTTCTCAGCATTGGAGGCTTCCGGGCAAGAGGTCTTGCCCCAAGGCCCCTTCTTC
CCTGGGCCTGGGCTGTGCTTATTGTCTTGCTGCTGTTGTGCCCAGGAAGGGTGGGGCCTC
CAAGGACTGGCCTGTCCCAAATGTTTTCCAGGGTGGCTGATGTGTGCTGTCCTCCTGCCT
GTCCAGCTCCCCCCAACCCCCAAGTCCCCTCTGGAAGAGAATGTAAAATAAATCTGGCTA
CAGAGAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGCTGCCCGAGTCTCTCCCTAACCCGCCCTCAGGTCCTGCTGGAGAGTTCCGGAGGCGG
CGGCCTCGGCGGCAGCGGGGACCGGCGTCCCGGGCCCTGACCGCGCCCGTCTCCCGCACA
GAGCTCGCAGGCGCCCCGACGGTCCCGGGAGCCGCGGCCTCCAGCGTGCCCGGCCTCCAC
CTGGAGCGCCAGCTCCCCGAATGCACTTTACCAGGGTTCCTCCCTGAGCCCCCACAGGAT
GGCGGATGGAGGAAGCCCCTTCCTAGGTTGTAGAGACTTTGTCTACCCTTCCTCAACCCG
AGACCCTAGTGCCTCGGAACGAGGGGCCAGCCCAGCCAGGAAGGAAGAGAAGAAGAGGAA
GGCCGCCAGGCTCAAGTTTGACTTCCAGGCACAGTCCCCTAAGGAGCTGACTCTGAAGAA
GGGTGACATTGTCTACATCCACAAAGAGGTGGACAAGAACTGGCTGGAGGGGGAGCACCA
TGGCGGGCTGGGTATCTTCCCTGCTAATTACGTGGAGGTGCTGCCTGCAGATGAGATCCC
CAAGCCCATCAAGCCTCCAACCTACCAGGTGCTGGAGTATGGAGAAGCTGTGGCCCAGTA
CAACTTCAAGGGGGATCTGGAGGTTGAACTTTCCTTCCGAAAGGGGGAGCGCATCTGCCT
GATCCGCAAGGTGAATGAGCACTGGTACGAGGGCCGTATCTCCGGCACCGGACGCCAGGG
CATCTTCCCTGCCAGCTACGTGCAGGTGAGCCGGGAGCCCCGGCTCCGGCTCTGCGAAGA
TGGCCCCCAGCTGCCTGCGTCCCCCCGCCTGAATGCCACCCGCCTGGCCCATCACCACAG
CTCCCCGTTAACGCCGCACAGCCCAGCTGACCCCACCGACTGGGGTGGCCGGACCTCCCC
CCGCCGCACTGGCTTCTCCTTCCCTGCCCAGGAGCCCAGACCCCAGACTCAGAGTCTCAG
CACCCCTGGGTCAGCTCTGTCCCATCCCGGAGTCTCCAGCCGTCCCCTGGACCAGGGGAC
CTCTTCCCTCAACACCACTCAGATACACTGGACCCCGTACCGGGCGATGTACCAGTACAG
GCCCCAGAACGAGGATGAGCTGGAGCTGCGGGAGGGGGACCGGGTGGATGTCATGCAGCA
GTGTGACGATGGCTGGTTTGTGGGTGTCTCCCGGAGGACTCAGAAATTTGGGACATTCCC
TGGAAATTACGTAGCCCCGGTGTGAGTGGTCTCCGTGGCAACACAGAGCCCAGCCAGGAT
GGGGCGGGGAGCAGTAGCACTTATGGGAGGGAGAGAGGACCCCTCTCTCCCACATCCTCC
TCCCCCAGGACCTGAGCTGCTGGCATCTGCTGACAACCCCGGCAGCCTTTCCCGCGGAAC
CTCCCTCAAAGCCCCCTGGACTGATTCCCACCCACCACTCACACGCATTCCTCTAACAGC
CGTTTTATTTCCTGCCCTACCCCACTCCCCAAATATAGAGGTCTGCTTTGAAGTGGAAAC
TGTTTCCCGGCCTTATTGAGACCAGACCCCCCTCACCCCACCCTGCTATGGCGTTTCCTC
TAACAGGGATCGGCTCCCAGCTTCACCCCCGTGGGGTTCCTCTAACAAGGACCAGCTTCC
TAACCAAAGGCCGCCTGTGCCCAGAGGGGATTCCTCCCCTTTCTCTCCAGCTTGCCTGCT
GCAGTCCCCTTTGCCTTCCTGCCTCCAGCTGAGCCTGGGAGCGAAGTGGGGGATGGATGC
AGCACTTTCTCAGCATTGGAGGCTTCCGGGCAAGAGGTCTTGCCCCAAGGCCCCTTCTTC
CCTGGGCCTGGGCTGTGCTTATTGTCTTGCTGCTGTTGTGCCCAGGAAGGGTGGGGCCTC
CAAGGACTGGCCTGTCCCAAATGTTTTCCAGGGTGGCTGATGTGTGCTGTCCTCCTGCCT
GTCCAGCTCCCCCCAACCCCCAAGTCCCCTCTGGAAGAGAATGTAAAATAAATCTGGCTA
CAGAGAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|13279209|gb|AAH04314.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13279209|gb|AAH04314.1|

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               384-1879, - strand, RNAz p=0.998885
               

               
               838-951, - strand, RNAz p=0.722352
               

               
               1163-1402, - strand, RNAz p=0.98203

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               384-1879, - strand, RNAz p=0.998885
               

               
               838-951, - strand, RNAz p=0.722352
               

               
               1163-1402, - strand, RNAz p=0.98203

Aligned organism(s): 7 entry(ies)

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Aligned organism(s): 7 entry(ies)

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               384-520, gnl|bosTau2|chr8 (30980240-30980104)
               

               
               384-520, gnl|Hg17|chr8 (22480500-22480636)
               

               
               384-520, gnl|Mm7|chr14 (64835344-64835209)
               


               
               642-952, gnl|bosTau2|chr8 (30975423-30975113)
               

               
               642-952, gnl|Hg17|chr8 (22484366-22484679)
               

               
               642-952, gnl|Mm7|chr14 (64829622-64829312)
               


               
               1163-1981, gnl|bosTau2|chr8 (30970806-30969992)

Aligned organism(s): 7 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               384-520, gnl|bosTau2|chr8 (30980240-30980104)
               

               
               384-520, gnl|Hg17|chr8 (22480500-22480636)
               

               
               384-520, gnl|Mm7|chr14 (64835344-64835209)
               


               
               642-952, gnl|bosTau2|chr8 (30975423-30975113)
               

               
               642-952, gnl|Hg17|chr8 (22484366-22484679)
               

               
               642-952, gnl|Mm7|chr14 (64829622-64829312)
               


               
               1163-1981, gnl|bosTau2|chr8 (30970806-30969992)

Expressed library(ies): 19 entry(ies)

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Expressed library(ies): 19 entry(ies)

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               fbs (0.526039)
               

               
               fhi (0.508733)
               

               
               eep (0.367692)
               

               
               cly (0.361925)
               

               
               cga (0.279096)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 19 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fbs (0.526039)
               

               
               fhi (0.508733)
               

               
               eep (0.367692)
               

               
               cly (0.361925)
               

               
               cga (0.279096)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               cag (0.151194)
               

               
               pty (0.142714)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               ese (0.126502)
               

               
               jca (0.11396)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	384-1879, - strand, RNAz p=0.998885
	838-951, - strand, RNAz p=0.722352
	1163-1402, - strand, RNAz p=0.98203

	384-520, gnl\|bosTau2\|chr8 (30980240-30980104)
	384-520, gnl\|Hg17\|chr8 (22480500-22480636)
	384-520, gnl\|Mm7\|chr14 (64835344-64835209)

	642-952, gnl\|bosTau2\|chr8 (30975423-30975113)
	642-952, gnl\|Hg17\|chr8 (22484366-22484679)
	642-952, gnl\|Mm7\|chr14 (64829622-64829312)

	1163-1981, gnl\|bosTau2\|chr8 (30970806-30969992)

	fbs (0.526039)
	fhi (0.508733)
	eep (0.367692)
	cly (0.361925)
	cga (0.279096)
	fcc (0.197785)
	col (0.195008)
	nlu (0.191681)
	mcp (0.170648)
	nco (0.161734)
	cag (0.151194)
	pty (0.142714)
	hlv (0.139256)
	nca (0.136874)
	ute (0.132784)
	ese (0.126502)
	jca (0.11396)
	cty (0.10408)
	jej (0.0989218)