Non-Coding RNA Search

Ss1.1-Pig2-110D14.5

Sequence:


               
               GAGCTCTCCTTGATCCATCACTGCTGCTGTTTTGTGTTACTTCGGGGAGGGAGGACTGGA
CCTGGCAAGGATCAGGGACCAGGAGGATCAGGAAAGGGCAGTGCCATTCTGCCACTGTTG
CTTTCACCTGCTCTTCTGGGCAGCTCAGCTCCTGCTTTTCAAGGGAGACTTGGATATAAG
GATCAAAGAACCAAATGTTTTTCAAGGGAAAATAGGAAAAAAAGAAAAAGCAGTTTCCTT
CTGCAGAACCCAAGGGTCCCGCTAATACAGAAATTCCTCTTCTCTGTTACAGAACAAAGT
GGAAAGGGCGGGAAAGCGGGGCCATGCCTGCCCAACAGAAAAGAAAATTACTCCAAACAG
TTTCTTCACAATATGTACAGAGCACGCTGTAAGCCAGCGCCACAGATACAAAACACACAA
CGATATTTAAAAGCAAACAGGAACAGAGATGAGCCCTTGGCTGCACCCCACAGAAGCCTG
GGAGGGCACAGTCAGGCTGAAATTCAGAGCCATCCTTCCAGGGGGGTGACTTGGGTTGGT
GTCTGTCTGCATCTCAATCCAGAAGGTCAAGGAAAGACAGAAGAGGAGAAGGAGGACAAA
GGGGATGGTACCTCAAAAGCAAATTAAGAGCTAAAGCTCCCCATACTTTGGGGAAGAAGT
GACTCCAATAAAGCAACAAATCACTGCCACTTTCCCAGTACAAAGAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCTCTCCTTGATCCATCACTGCTGCTGTTTTGTGTTACTTCGGGGAGGGAGGACTGGA
CCTGGCAAGGATCAGGGACCAGGAGGATCAGGAAAGGGCAGTGCCATTCTGCCACTGTTG
CTTTCACCTGCTCTTCTGGGCAGCTCAGCTCCTGCTTTTCAAGGGAGACTTGGATATAAG
GATCAAAGAACCAAATGTTTTTCAAGGGAAAATAGGAAAAAAAGAAAAAGCAGTTTCCTT
CTGCAGAACCCAAGGGTCCCGCTAATACAGAAATTCCTCTTCTCTGTTACAGAACAAAGT
GGAAAGGGCGGGAAAGCGGGGCCATGCCTGCCCAACAGAAAAGAAAATTACTCCAAACAG
TTTCTTCACAATATGTACAGAGCACGCTGTAAGCCAGCGCCACAGATACAAAACACACAA
CGATATTTAAAAGCAAACAGGAACAGAGATGAGCCCTTGGCTGCACCCCACAGAAGCCTG
GGAGGGCACAGTCAGGCTGAAATTCAGAGCCATCCTTCCAGGGGGGTGACTTGGGTTGGT
GTCTGTCTGCATCTCAATCCAGAAGGTCAAGGAAAGACAGAAGAGGAGAAGGAGGACAAA
GGGGATGGTACCTCAAAAGCAAATTAAGAGCTAAAGCTCCCCATACTTTGGGGAAGAAGT
GACTCCAATAAAGCAACAAATCACTGCCACTTTCCCAGTACAAAGAGC

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               119-223, - strand, RNAz p=0.705736
               

               
               240-357, - strand, RNAz p=0.867518
               

               
               529-619, - strand, RNAz p=0.779711
               

               
               591-708, + strand, RNAz p=0.851257

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               119-223, - strand, RNAz p=0.705736
               

               
               240-357, - strand, RNAz p=0.867518
               

               
               529-619, - strand, RNAz p=0.779711
               

               
               591-708, + strand, RNAz p=0.851257

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               3-526, gnl|bosTau2|chr10 (30590860-30590349)
               

               
               3-526, gnl|Hg17|chr15 (62763398-62762921)
               

               
               3-526, gnl|Mm7|chr9 (65722946-65723487)
               


               
               529-708, gnl|bosTau2|chr10 (30589926-30589747)
               

               
               529-708, gnl|canFam2|chr30 (32112796-32113172)
               

               
               529-708, gnl|dasNov1|scaffold_3293 (97262-97646)
               

               
               529-708, gnl|echTel1|scaffold_320164 (44074-44378)
               

               
               529-708, gnl|hg17|chr15 (62762098-62762493)
               

               
               529-708, gnl|Hg17|chr15 (62762495-62762313)
               

               
               529-708, gnl|loxAfr1|scaffold_38194 (2663-3057)
               

               
               529-708, gnl|mm7|chr9 (65724243-65723881)
               

               
               529-708, gnl|Mm7|chr9 (65723877-65724047)
               

               
               529-708, gnl|monDom2|scaffold_12 (48752322-48751973)
               

               
               529-708, gnl|oryCun1|scaffold_76199 (925-1320)
               

               
               529-708, gnl|panTro1|chr16 (63228869-63229265)
               

               
               529-708, gnl|rheMac2|chr7 (43140993-43141383)
               

               
               529-708, gnl|rn3|chr8 (69971923-69971567)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-526, gnl|bosTau2|chr10 (30590860-30590349)
               

               
               3-526, gnl|Hg17|chr15 (62763398-62762921)
               

               
               3-526, gnl|Mm7|chr9 (65722946-65723487)
               


               
               529-708, gnl|bosTau2|chr10 (30589926-30589747)
               

               
               529-708, gnl|canFam2|chr30 (32112796-32113172)
               

               
               529-708, gnl|dasNov1|scaffold_3293 (97262-97646)
               

               
               529-708, gnl|echTel1|scaffold_320164 (44074-44378)
               

               
               529-708, gnl|hg17|chr15 (62762098-62762493)
               

               
               529-708, gnl|Hg17|chr15 (62762495-62762313)
               

               
               529-708, gnl|loxAfr1|scaffold_38194 (2663-3057)
               

               
               529-708, gnl|mm7|chr9 (65724243-65723881)
               

               
               529-708, gnl|Mm7|chr9 (65723877-65724047)
               

               
               529-708, gnl|monDom2|scaffold_12 (48752322-48751973)
               

               
               529-708, gnl|oryCun1|scaffold_76199 (925-1320)
               

               
               529-708, gnl|panTro1|chr16 (63228869-63229265)
               

               
               529-708, gnl|rheMac2|chr7 (43140993-43141383)
               

               
               529-708, gnl|rn3|chr8 (69971923-69971567)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	119-223, - strand, RNAz p=0.705736
	240-357, - strand, RNAz p=0.867518
	529-619, - strand, RNAz p=0.779711
	591-708, + strand, RNAz p=0.851257

	3-526, gnl\|bosTau2\|chr10 (30590860-30590349)
	3-526, gnl\|Hg17\|chr15 (62763398-62762921)
	3-526, gnl\|Mm7\|chr9 (65722946-65723487)

	529-708, gnl\|bosTau2\|chr10 (30589926-30589747)
	529-708, gnl\|canFam2\|chr30 (32112796-32113172)
	529-708, gnl\|dasNov1\|scaffold_3293 (97262-97646)
	529-708, gnl\|echTel1\|scaffold_320164 (44074-44378)
	529-708, gnl\|hg17\|chr15 (62762098-62762493)
	529-708, gnl\|Hg17\|chr15 (62762495-62762313)
	529-708, gnl\|loxAfr1\|scaffold_38194 (2663-3057)
	529-708, gnl\|mm7\|chr9 (65724243-65723881)
	529-708, gnl\|Mm7\|chr9 (65723877-65724047)
	529-708, gnl\|monDom2\|scaffold_12 (48752322-48751973)
	529-708, gnl\|oryCun1\|scaffold_76199 (925-1320)
	529-708, gnl\|panTro1\|chr16 (63228869-63229265)
	529-708, gnl\|rheMac2\|chr7 (43140993-43141383)
	529-708, gnl\|rn3\|chr8 (69971923-69971567)