Non-Coding RNA Search

Ss1.1-Pig2-110G13.5

Sequence:


               
               ATTCGCACATCCTCGTGGCCCAGAGGCAGGTGCAGGTGGCAGAGGAAGCCCTGCAGGACT
TCCACCATGCCCTGTGCTGCTATGTGGACTTCACAGGGGCCCAGAGCCATTGCCTGCAGT
GAGTCCTCAGCCGGGTAGTGGGCCGGCCAAGGTGGGAGTAGGGGGTGAGCAGGGAGGAAT
GCTGGGGCTGGCTGTCCTGGGCTAGGGCTTTCGCTGGACAACCATGGCTAGGTGGGCAGA
GGTTGGCGGCAGCCCTGGCCTGGCCTGGCCATCTCTTTGGCCCTGCAGTGTGTCTGCCCA
GAAGACGCTGGACAATGCCTCCTTCACGCTGTACGAGTTCTGGCAGGATGAGGCCTCCTG
GAGAAGGTAGGAGTGGTGGTCTCACAGCTAATGTTTATTGAGTATGGGCCCTGGAGTGAG
TCAAGCCTGGGTTCAAGTCATTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTCGCACATCCTCGTGGCCCAGAGGCAGGTGCAGGTGGCAGAGGAAGCCCTGCAGGACT
TCCACCATGCCCTGTGCTGCTATGTGGACTTCACAGGGGCCCAGAGCCATTGCCTGCAGT
GAGTCCTCAGCCGGGTAGTGGGCCGGCCAAGGTGGGAGTAGGGGGTGAGCAGGGAGGAAT
GCTGGGGCTGGCTGTCCTGGGCTAGGGCTTTCGCTGGACAACCATGGCTAGGTGGGCAGA
GGTTGGCGGCAGCCCTGGCCTGGCCTGGCCATCTCTTTGGCCCTGCAGTGTGTCTGCCCA
GAAGACGCTGGACAATGCCTCCTTCACGCTGTACGAGTTCTGGCAGGATGAGGCCTCCTG
GAGAAGGTAGGAGTGGTGGTCTCACAGCTAATGTTTATTGAGTATGGGCCCTGGAGTGAG
TCAAGCCTGGGTTCAAGTCATTCT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               84-315, + strand, RNAz p=0.9913

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               84-315, + strand, RNAz p=0.9913

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               29-116, - strand, RNAmicro p=0.989547

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               29-116, - strand, RNAmicro p=0.989547

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-439, gnl|bosTau2|chr13 (48310133-48310556)
               

               
               5-439, gnl|Hg17|chr20 (31710302-31709873)
               

               
               5-439, gnl|Mm7|chr2 (154287199-154286816)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-439, gnl|bosTau2|chr13 (48310133-48310556)
               

               
               5-439, gnl|Hg17|chr20 (31710302-31709873)
               

               
               5-439, gnl|Mm7|chr2 (154287199-154286816)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ece (0.229305)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)

	5-439, gnl\|bosTau2\|chr13 (48310133-48310556)
	5-439, gnl\|Hg17\|chr20 (31710302-31709873)
	5-439, gnl\|Mm7\|chr2 (154287199-154286816)