Ss1.1-Pig2-110H09.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACGCGTCGTAGACGTTGGGGAGCAGGCGGCAGCGGCAGCGGGGTCGGGATGAACAGCGGC GGCGGCTTCGGTTTGGGATTAGGCTTCGGCCTCACCCCTACGGCGGTGATTCAGGTGACG AATCTGTCGTCGGCGGTGACCAGCGAGCAGATGCGGACGCTTTTTTCCTTCCTAGGAGAA ATCGAGGAGCTGCGTCTCTACCCCCCGGACAACGCACCTCTTGCTTTTTCTTCCAAAGTA TGTTATGTTAAGTTTCGTGACCCATCAAGTGTTGGCGTGGCCCAGCATCTAACTAACACG GTTTTTATTGACAGAGCTCTGATAGTTGTTCCTTGTGCAGAAGGTAAAATCCCAGAGGAA GCCAAAGCCCTCTCTCTATTGGCTCCTGCTCCAACCATGACAGGTCTGATGCCTGGTGCA GGCTTGCTTCCCATCCCGACCCCAAATCCCCTGACTACACTGGGTGTTTCCCTTAGCAGT TTGGGAGCTATACCAGCAGCAGCACTAGACCCCAACATTGCAACACTTGGAGAGATACCA CAGCCACCACTTATGGGAAATGTGGATCCTTCCAAAATTGATGAAATTAGGAGAACTGTC TATGTTGGCAATTTGAATTCCCAGACAACCACAGCTGATCAACTACTTGAATTTTTTAAA CAAGTTGGAGAAGTGAAGTTTGTGCGGATGGCAGGTGATGAGACTCAGCCGACTCGGTTT GCTTTTGTGGAATTTGCAGACCAAAATTCTGTACCAAGGGCCCTTGCTTTTAATGGAGTT ATGTTTGGAGACAGGCCACTGAAAATAAATCACTCCAACAATGCAATAGTAAAACCCCCT GAGATGACACCTCAGGCTGCAGCTAAGGAGTTAGAAGAAGTAATGAAGCGAGTACGAGAG GCTCAGTCCTTTATCTCAGCAGCTATCGAACCAGAGTCTGGAAAGAGCAATGAAAGAAAA GGCGGTCGATCTCGTTCCCACACTCGTTCAAAATCCAGGTCTAGCTCAAAATCCCGTTCT AGAAGGAAAAGATCACAGTCAAAACACAGGAGTAGATCTCATAATAGATCACGTTCAAGA CAAAAAGATAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACGCGTCGTAGACGTTGGGGAGCAGGCGGCAGCGGCAGCGGGGTCGGGATGAACAGCGGC GGCGGCTTCGGTTTGGGATTAGGCTTCGGCCTCACCCCTACGGCGGTGATTCAGGTGACG AATCTGTCGTCGGCGGTGACCAGCGAGCAGATGCGGACGCTTTTTTCCTTCCTAGGAGAA ATCGAGGAGCTGCGTCTCTACCCCCCGGACAACGCACCTCTTGCTTTTTCTTCCAAAGTA TGTTATGTTAAGTTTCGTGACCCATCAAGTGTTGGCGTGGCCCAGCATCTAACTAACACG GTTTTTATTGACAGAGCTCTGATAGTTGTTCCTTGTGCAGAAGGTAAAATCCCAGAGGAA GCCAAAGCCCTCTCTCTATTGGCTCCTGCTCCAACCATGACAGGTCTGATGCCTGGTGCA GGCTTGCTTCCCATCCCGACCCCAAATCCCCTGACTACACTGGGTGTTTCCCTTAGCAGT TTGGGAGCTATACCAGCAGCAGCACTAGACCCCAACATTGCAACACTTGGAGAGATACCA CAGCCACCACTTATGGGAAATGTGGATCCTTCCAAAATTGATGAAATTAGGAGAACTGTC TATGTTGGCAATTTGAATTCCCAGACAACCACAGCTGATCAACTACTTGAATTTTTTAAA CAAGTTGGAGAAGTGAAGTTTGTGCGGATGGCAGGTGATGAGACTCAGCCGACTCGGTTT GCTTTTGTGGAATTTGCAGACCAAAATTCTGTACCAAGGGCCCTTGCTTTTAATGGAGTT ATGTTTGGAGACAGGCCACTGAAAATAAATCACTCCAACAATGCAATAGTAAAACCCCCT GAGATGACACCTCAGGCTGCAGCTAAGGAGTTAGAAGAAGTAATGAAGCGAGTACGAGAG GCTCAGTCCTTTATCTCAGCAGCTATCGAACCAGAGTCTGGAAAGAGCAATGAAAGAAAA GGCGGTCGATCTCGTTCCCACACTCGTTCAAAATCCAGGTCTAGCTCAAAATCCCGTTCT AGAAGGAAAAGATCACAGTCAAAACACAGGAGTAGATCTCATAATAGATCACGTTCAAGA CAAAAAGATAGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 716-832, - strand, RNAz p=0.57324 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 716-832, - strand, RNAz p=0.57324 |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 1-209, gnl|bosTau2|chr20 (8334516-8334309) | |
| 1-209, gnl|Hg17|chr5 (65475912-65476121) | |
| 1-209, gnl|Mm7|chr13 (100912395-100912186) | |
| 210-345, gnl|bosTau2|chr20 (8323914-8323779) | |
| 210-345, gnl|Hg17|chr5 (65485047-65485182) | |
| 210-345, gnl|Mm7|chr13 (100907337-100907202) | |
| 622-832, gnl|bosTau2|chr20 (8311658-8311448) | |
| 622-832, gnl|canFam2|chr2 (54653471-54653689) | |
| 622-832, gnl|danRer3|chrUn (154605965-154605749) | |
| 622-832, gnl|dasNov1|scaffold_144501 (39664-39446) | |
| 622-832, gnl|echTel1|scaffold_302312 (694-912) | |
| 622-832, gnl|fr1|chrUn (58458351-58458546) | |
| 622-832, gnl|galGal2|chrZ (4152029-4152251) | |
| 622-832, gnl|hg17|chr5 (65493964-65494182) | |
| 622-832, gnl|Hg17|chr5 (65493995-65494205) | |
| 622-832, gnl|loxAfr1|scaffold_1220 (27585-27371) | |
| 622-832, gnl|mm7|chr13 (100898522-100898299) | |
| 622-832, gnl|Mm7|chr13 (100898484-100898274) | |
| 622-832, gnl|monDom2|scaffold_27 (31515352-31515566) | |
| 622-832, gnl|oryCun1|scaffold_202754 (10036-10254) | |
| 622-832, gnl|panTro1|chr4 (50439781-50439563) | |
| 622-832, gnl|rheMac2|chr6 (64075647-64075865) | |
| 622-832, gnl|rn3|chr2 (34614574-34614792) | |
| 622-832, gnl|tetNig1|chrUn_random (1949995-1949800) | |
| 622-832, gnl|xenTro1|scaffold_183 (46441-46659) | |
| 931-1050, gnl|bosTau2|chr20 (8309419-8309300) | |
| 931-1050, gnl|Hg17|chr5 (65496363-65496482) | |
| 931-1050, gnl|Mm7|chr13 (100896191-100896072) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-209, gnl|bosTau2|chr20 (8334516-8334309) | |
| 1-209, gnl|Hg17|chr5 (65475912-65476121) | |
| 1-209, gnl|Mm7|chr13 (100912395-100912186) | |
| 210-345, gnl|bosTau2|chr20 (8323914-8323779) | |
| 210-345, gnl|Hg17|chr5 (65485047-65485182) | |
| 210-345, gnl|Mm7|chr13 (100907337-100907202) | |
| 622-832, gnl|bosTau2|chr20 (8311658-8311448) | |
| 622-832, gnl|canFam2|chr2 (54653471-54653689) | |
| 622-832, gnl|danRer3|chrUn (154605965-154605749) | |
| 622-832, gnl|dasNov1|scaffold_144501 (39664-39446) | |
| 622-832, gnl|echTel1|scaffold_302312 (694-912) | |
| 622-832, gnl|fr1|chrUn (58458351-58458546) | |
| 622-832, gnl|galGal2|chrZ (4152029-4152251) | |
| 622-832, gnl|hg17|chr5 (65493964-65494182) | |
| 622-832, gnl|Hg17|chr5 (65493995-65494205) | |
| 622-832, gnl|loxAfr1|scaffold_1220 (27585-27371) | |
| 622-832, gnl|mm7|chr13 (100898522-100898299) | |
| 622-832, gnl|Mm7|chr13 (100898484-100898274) | |
| 622-832, gnl|monDom2|scaffold_27 (31515352-31515566) | |
| 622-832, gnl|oryCun1|scaffold_202754 (10036-10254) | |
| 622-832, gnl|panTro1|chr4 (50439781-50439563) | |
| 622-832, gnl|rheMac2|chr6 (64075647-64075865) | |
| 622-832, gnl|rn3|chr2 (34614574-34614792) | |
| 622-832, gnl|tetNig1|chrUn_random (1949995-1949800) | |
| 622-832, gnl|xenTro1|scaffold_183 (46441-46659) | |
| 931-1050, gnl|bosTau2|chr20 (8309419-8309300) | |
| 931-1050, gnl|Hg17|chr5 (65496363-65496482) | |
| 931-1050, gnl|Mm7|chr13 (100896191-100896072) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hea (0.408998) | |
| bla (0.124347) |