Ss1.1-Pig2-110I11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATAAGGAATACTGTATTACCAGCGATGACCTCTTCTCACTGCCCTACTGCCCAGGCACCA CCCTGGTGGTGGGGGCGTCCTACGTGGCCCTGGAGTGTGCAGGTTTCCTGGCCGGCCTGG GCCTCGACGTCACGGTCATGGTGCGCTCTGTGCTCCTGCGGGGCTTTGACCAGGAGATGG CCGAGAGGGTGGGCTCCTACATGGAGCAGCACGGCGTCCGCTTCTTGCGCAAGTTTGTGC CTGTGGAGGTACAGCAGCTGGAGAAGGGGTCCCCTGGGAAGCTGAAGGTCATGGCTAAAT CTACAGAAGGTCCAGAGACAATCGAAGGGGTTTATAACACGGTTTTGTTAGCAATTGGTC GTGACTCCTGTACAAAGAAAATGGGATTGGAGAAGATTGGTGTCAAAATCAATGAGAAGA GTGGCAAAATCCCAGTGAACGATGTGGAACAGACCAATGTGCCCTACGTTTATGCTGTTG GGGATGTCCTTGAGGGCAAGCCTGAGCTCACACCCATTGCTGTGCAGGCGGGCAAGCTGC TGGCTCGGAGGCTCTTTGGGGGCCGGTTAGAGAAGTGTGACTACGTTAATGTCCCCACTG TGGTGTTCACACCTTTGGAGTACGGCTGCTGCGGGTACTCTGAGGAGAGAGCCATTGAGG TGTATCAGAAAGAGAACCTAGAGGTCTACCACACTCTTTTCTGGCCTCTTGAGTGGACAG TGGCCTGCAGAGACAACAATACTTGTTATGCGAAGATAATCTGCAATAAATTGGACAATG ATCGGGTGATAGGATTTCATGTTCTTGGACCGAATGCTGGCGAGATTATCCAGGGGTTCG CAGCCGCCATGAAATGTGGGCTCACGAAGCAGCTTCTTGACGACACCATTGGAATCCACC CCACATGTGCTGAGGTGTTCACAACGTTGCAGATCACGAAGGCGTCGGGCCTGGATGTCA CTCAGAAGGGCTGCTGAGGCTAAGTTGCTGCTGTGTAGTCTCGTCTGCGCCTGTGAGCAC GGACAGGGAGACAGGACAGCAGCGGTGCCTGCCTGGCCTGCTGACGGGGAGGGGCAGCTA CGCTGCCTCCTTGACGTCCTTGCTCGAAGCCCGCCCAGAGGTGAGCCAGGACCGACCTCT TCCCAACTCATCCATCGTCCCTGGATGCTGCATTTTCCCTCTTGCTTTGTTGATTCCCTG GAATTATTTTGTTGTGAAACTGACTAAAGTGGGTCTGCTCAGCTCCACAGCCGCAGGCAC GGGTGGTGGAAAGCGGCGCCCACCATCTCCTGCTGTGGGCACTTTTTCTTGGCGGTCACA ACCCGCCTCTCCCCGGCCTGGTCCCCAGTGGCGACCACCTGGCCATTCTCCACTTTAAGC CCCTGACTGAGCAGAAGAGCTCACGTCAGACCATGCTGAGCTTAAGAGTAACATTAAAGG GTTCTCAATAGTATGTTATGAGAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATAAGGAATACTGTATTACCAGCGATGACCTCTTCTCACTGCCCTACTGCCCAGGCACCA CCCTGGTGGTGGGGGCGTCCTACGTGGCCCTGGAGTGTGCAGGTTTCCTGGCCGGCCTGG GCCTCGACGTCACGGTCATGGTGCGCTCTGTGCTCCTGCGGGGCTTTGACCAGGAGATGG CCGAGAGGGTGGGCTCCTACATGGAGCAGCACGGCGTCCGCTTCTTGCGCAAGTTTGTGC CTGTGGAGGTACAGCAGCTGGAGAAGGGGTCCCCTGGGAAGCTGAAGGTCATGGCTAAAT CTACAGAAGGTCCAGAGACAATCGAAGGGGTTTATAACACGGTTTTGTTAGCAATTGGTC GTGACTCCTGTACAAAGAAAATGGGATTGGAGAAGATTGGTGTCAAAATCAATGAGAAGA GTGGCAAAATCCCAGTGAACGATGTGGAACAGACCAATGTGCCCTACGTTTATGCTGTTG GGGATGTCCTTGAGGGCAAGCCTGAGCTCACACCCATTGCTGTGCAGGCGGGCAAGCTGC TGGCTCGGAGGCTCTTTGGGGGCCGGTTAGAGAAGTGTGACTACGTTAATGTCCCCACTG TGGTGTTCACACCTTTGGAGTACGGCTGCTGCGGGTACTCTGAGGAGAGAGCCATTGAGG TGTATCAGAAAGAGAACCTAGAGGTCTACCACACTCTTTTCTGGCCTCTTGAGTGGACAG TGGCCTGCAGAGACAACAATACTTGTTATGCGAAGATAATCTGCAATAAATTGGACAATG ATCGGGTGATAGGATTTCATGTTCTTGGACCGAATGCTGGCGAGATTATCCAGGGGTTCG CAGCCGCCATGAAATGTGGGCTCACGAAGCAGCTTCTTGACGACACCATTGGAATCCACC CCACATGTGCTGAGGTGTTCACAACGTTGCAGATCACGAAGGCGTCGGGCCTGGATGTCA CTCAGAAGGGCTGCTGAGGCTAAGTTGCTGCTGTGTAGTCTCGTCTGCGCCTGTGAGCAC GGACAGGGAGACAGGACAGCAGCGGTGCCTGCCTGGCCTGCTGACGGGGAGGGGCAGCTA CGCTGCCTCCTTGACGTCCTTGCTCGAAGCCCGCCCAGAGGTGAGCCAGGACCGACCTCT TCCCAACTCATCCATCGTCCCTGGATGCTGCATTTTCCCTCTTGCTTTGTTGATTCCCTG GAATTATTTTGTTGTGAAACTGACTAAAGTGGGTCTGCTCAGCTCCACAGCCGCAGGCAC GGGTGGTGGAAAGCGGCGCCCACCATCTCCTGCTGTGGGCACTTTTTCTTGGCGGTCACA ACCCGCCTCTCCCCGGCCTGGTCCCCAGTGGCGACCACCTGGCCATTCTCCACTTTAAGC CCCTGACTGAGCAGAAGAGCTCACGTCAGACCATGCTGAGCTTAAGAGTAACATTAAAGG GTTCTCAATAGTATGTTATGAGAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 20-250, gnl|bosTau2|chr7 (16922152-16921922) | |
| 20-250, gnl|canFam2|chr20 (3810045-3810312) | |
| 20-250, gnl|danRer3|chrNA (185510584-185510325) | |
| 20-250, gnl|dasNov1|scaffold_295342 (457-710) | |
| 20-250, gnl|echTel1|scaffold_179661 (15366-15621) | |
| 20-250, gnl|fr1|chrUn (102117600-102117846) | |
| 20-250, gnl|galGal2|chr12 (10432883-10432639) | |
| 20-250, gnl|hg17|chr3 (127832236-127832503) | |
| 20-250, gnl|Hg17|chr3 (127832512-127832251) | |
| 20-250, gnl|loxAfr1|scaffold_18085 (9749-10024) | |
| 20-250, gnl|mm7|chr6 (89739715-89739453) | |
| 20-250, gnl|Mm7|chr6 (89739468-89739698) | |
| 20-250, gnl|monDom2|scaffold_5 (44438873-44439145) | |
| 20-250, gnl|oryCun1|scaffold_214497 (7993-8266) | |
| 20-250, gnl|panTro1|chr2 (129673605-129673872) | |
| 20-250, gnl|rheMac2|chr2 (46394701-46394968) | |
| 20-250, gnl|rn3|chr4 (124005826-124005564) | |
| 20-250, gnl|tetNig1|chr11 (10336396-10336645) | |
| 20-250, gnl|xenTro1|scaffold_368 (76939-77213) | |
| 423-575, gnl|bosTau2|chr7 (16914903-16914751) | |
| 423-575, gnl|canFam2|chr20 (3802627-3802803) | |
| 423-575, gnl|danRer3|chrNA (185515180-185515042) | |
| 423-575, gnl|echTel1|scaffold_311716 (38167-38350) | |
| 423-575, gnl|fr1|chrUn (102116103-102116267) | |
| 423-575, gnl|galGal2|chr12 (10435014-10434848) | |
| 423-575, gnl|hg17|chr3 (127823262-127823442) | |
| 423-575, gnl|Hg17|chr3 (127823435-127823283) | |
| 423-575, gnl|loxAfr1|scaffold_13754 (46964-47149) | |
| 423-575, gnl|mm7|chr6 (89745090-89744910) | |
| 423-575, gnl|Mm7|chr6 (89744915-89745067) | |
| 423-575, gnl|monDom2|scaffold_5 (44434743-44434924) | |
| 423-575, gnl|oryCun1|scaffold_1270 (2023-1840) | |
| 423-575, gnl|panTro1|chr2 (129664544-129664724) | |
| 423-575, gnl|rheMac2|chr2 (46384949-46385128) | |
| 423-575, gnl|rn3|chr4 (124011052-124010872) | |
| 423-575, gnl|tetNig1|chr11 (10335188-10335349) | |
| 423-575, gnl|xenTro1|scaffold_368 (72764-72945) | |
| 777-917, gnl|bosTau2|chr7 (16907125-16906985) | |
| 777-917, gnl|canFam2|chr20 (3784710-3784848) | |
| 777-917, gnl|danRer3|chrNA (185517447-185517309) | |
| 777-917, gnl|dasNov1|scaffold_49302 (8427-8565) | |
| 777-917, gnl|echTel1|scaffold_288167 (91770-91908) | |
| 777-917, gnl|fr1|chrUn (102115315-102115453) | |
| 777-917, gnl|galGal2|chr12 (10437838-10437700) | |
| 777-917, gnl|hg17|chr3 (127810039-127810177) | |
| 777-917, gnl|Hg17|chr3 (127810177-127810038) | |
| 777-917, gnl|loxAfr1|scaffold_13754 (34844-34982) | |
| 777-917, gnl|mm7|chr6 (89749291-89749153) | |
| 777-917, gnl|Mm7|chr6 (89749151-89749290) | |
| 777-917, gnl|monDom2|scaffold_5 (44422894-44423032) | |
| 777-917, gnl|oryCun1|scaffold_131118 (11493-11355) | |
| 777-917, gnl|panTro1|chr2 (129651324-129651462) | |
| 777-917, gnl|rheMac2|chr2 (46372072-46372210) | |
| 777-917, gnl|rn3|chr4 (124014792-124014654) | |
| 777-917, gnl|tetNig1|chr11 (10334375-10334513) | |
| 777-917, gnl|xenTro1|scaffold_368 (68673-68811) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 20-250, gnl|bosTau2|chr7 (16922152-16921922) | |
| 20-250, gnl|canFam2|chr20 (3810045-3810312) | |
| 20-250, gnl|danRer3|chrNA (185510584-185510325) | |
| 20-250, gnl|dasNov1|scaffold_295342 (457-710) | |
| 20-250, gnl|echTel1|scaffold_179661 (15366-15621) | |
| 20-250, gnl|fr1|chrUn (102117600-102117846) | |
| 20-250, gnl|galGal2|chr12 (10432883-10432639) | |
| 20-250, gnl|hg17|chr3 (127832236-127832503) | |
| 20-250, gnl|Hg17|chr3 (127832512-127832251) | |
| 20-250, gnl|loxAfr1|scaffold_18085 (9749-10024) | |
| 20-250, gnl|mm7|chr6 (89739715-89739453) | |
| 20-250, gnl|Mm7|chr6 (89739468-89739698) | |
| 20-250, gnl|monDom2|scaffold_5 (44438873-44439145) | |
| 20-250, gnl|oryCun1|scaffold_214497 (7993-8266) | |
| 20-250, gnl|panTro1|chr2 (129673605-129673872) | |
| 20-250, gnl|rheMac2|chr2 (46394701-46394968) | |
| 20-250, gnl|rn3|chr4 (124005826-124005564) | |
| 20-250, gnl|tetNig1|chr11 (10336396-10336645) | |
| 20-250, gnl|xenTro1|scaffold_368 (76939-77213) | |
| 423-575, gnl|bosTau2|chr7 (16914903-16914751) | |
| 423-575, gnl|canFam2|chr20 (3802627-3802803) | |
| 423-575, gnl|danRer3|chrNA (185515180-185515042) | |
| 423-575, gnl|echTel1|scaffold_311716 (38167-38350) | |
| 423-575, gnl|fr1|chrUn (102116103-102116267) | |
| 423-575, gnl|galGal2|chr12 (10435014-10434848) | |
| 423-575, gnl|hg17|chr3 (127823262-127823442) | |
| 423-575, gnl|Hg17|chr3 (127823435-127823283) | |
| 423-575, gnl|loxAfr1|scaffold_13754 (46964-47149) | |
| 423-575, gnl|mm7|chr6 (89745090-89744910) | |
| 423-575, gnl|Mm7|chr6 (89744915-89745067) | |
| 423-575, gnl|monDom2|scaffold_5 (44434743-44434924) | |
| 423-575, gnl|oryCun1|scaffold_1270 (2023-1840) | |
| 423-575, gnl|panTro1|chr2 (129664544-129664724) | |
| 423-575, gnl|rheMac2|chr2 (46384949-46385128) | |
| 423-575, gnl|rn3|chr4 (124011052-124010872) | |
| 423-575, gnl|tetNig1|chr11 (10335188-10335349) | |
| 423-575, gnl|xenTro1|scaffold_368 (72764-72945) | |
| 777-917, gnl|bosTau2|chr7 (16907125-16906985) | |
| 777-917, gnl|canFam2|chr20 (3784710-3784848) | |
| 777-917, gnl|danRer3|chrNA (185517447-185517309) | |
| 777-917, gnl|dasNov1|scaffold_49302 (8427-8565) | |
| 777-917, gnl|echTel1|scaffold_288167 (91770-91908) | |
| 777-917, gnl|fr1|chrUn (102115315-102115453) | |
| 777-917, gnl|galGal2|chr12 (10437838-10437700) | |
| 777-917, gnl|hg17|chr3 (127810039-127810177) | |
| 777-917, gnl|Hg17|chr3 (127810177-127810038) | |
| 777-917, gnl|loxAfr1|scaffold_13754 (34844-34982) | |
| 777-917, gnl|mm7|chr6 (89749291-89749153) | |
| 777-917, gnl|Mm7|chr6 (89749151-89749290) | |
| 777-917, gnl|monDom2|scaffold_5 (44422894-44423032) | |
| 777-917, gnl|oryCun1|scaffold_131118 (11493-11355) | |
| 777-917, gnl|panTro1|chr2 (129651324-129651462) | |
| 777-917, gnl|rheMac2|chr2 (46372072-46372210) | |
| 777-917, gnl|rn3|chr4 (124014792-124014654) | |
| 777-917, gnl|tetNig1|chr11 (10334375-10334513) | |
| 777-917, gnl|xenTro1|scaffold_368 (68673-68811) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| cga (0.558191) | |
| cte (0.29274) | |
| ill (0.175593) | |
| pla (0.133672) | |
| cly (0.120642) | |
| cty (0.10408) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cga (0.558191) | |
| cte (0.29274) | |
| ill (0.175593) | |
| pla (0.133672) | |
| cly (0.120642) | |
| cty (0.10408) |