Non-Coding RNA Search

Ss1.1-Pig2-110M09.5

Sequence:


               
               CGGGTCCGGCTCTCAGTACCCTGAAGCTGCTCGGTCCGCCTTCCGTGGGTTTAGTAGCGT
TTCTCCACCCGGAGTCGTGGTCCAGGAATAGAATCTGGTGCTGCTGCGGGCCGGCCTCAC
GCTATCCCTGCCCCTCGGCCCCCGGAGTGAGCCCGGCCTCCCTGCGAGGAAAGGGAAAAT
GCCTAAAAAAAAGACTGGTGCGAGGAAGAAGGCAGAGAACCGCCGGGAACGTGAGAAGCA
ACTAAGAGCATCAAGAAGCACTATTGACTTAGCTAAACACCCATGCAATGCTTCAATGGA
ATGTGACAAGTGTCAGAGGCGGCAGAAGAATAGAGCGTTTTGCTATTTTTGTAATTCTGT
ACAGAAGTTACCAATTTGCGCACAGTGTGGGAAAACAAAGTGCATGATGAAGTCTTCAGA
CTGTGTCATAAAACATGCTGGTGTCTACAGTACCGGCCTCGCAATGGTGGGTGCAATATG
TGACTTCTGTGAAGCTTGGGTTTGCCATGGTAGGAAGTGTCTCAGTACACATGCCTGTGC
CTGCCCACTTACCGACGCCGAGTGTGTGGAATGTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGGTCCGGCTCTCAGTACCCTGAAGCTGCTCGGTCCGCCTTCCGTGGGTTTAGTAGCGT
TTCTCCACCCGGAGTCGTGGTCCAGGAATAGAATCTGGTGCTGCTGCGGGCCGGCCTCAC
GCTATCCCTGCCCCTCGGCCCCCGGAGTGAGCCCGGCCTCCCTGCGAGGAAAGGGAAAAT
GCCTAAAAAAAAGACTGGTGCGAGGAAGAAGGCAGAGAACCGCCGGGAACGTGAGAAGCA
ACTAAGAGCATCAAGAAGCACTATTGACTTAGCTAAACACCCATGCAATGCTTCAATGGA
ATGTGACAAGTGTCAGAGGCGGCAGAAGAATAGAGCGTTTTGCTATTTTTGTAATTCTGT
ACAGAAGTTACCAATTTGCGCACAGTGTGGGAAAACAAAGTGCATGATGAAGTCTTCAGA
CTGTGTCATAAAACATGCTGGTGTCTACAGTACCGGCCTCGCAATGGTGGGTGCAATATG
TGACTTCTGTGAAGCTTGGGTTTGCCATGGTAGGAAGTGTCTCAGTACACATGCCTGTGC
CTGCCCACTTACCGACGCCGAGTGTGTGGAATGTGA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26352131|dbj|BAC39702.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26352131|dbj|BAC39702.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               3-169, gnl|bosTau2|chr17 (9984867-9985031)
               

               
               3-169, gnl|Hg17|chr4 (142499674-142499836)
               


               
               171-576, gnl|bosTau2|chr14 (7710609-7711014)
               

               
               171-576, gnl|Hg17|chr4 (142501123-142508436)
               

               
               171-576, gnl|Mm7|chr1 (91203482-91203861)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-169, gnl|bosTau2|chr17 (9984867-9985031)
               

               
               3-169, gnl|Hg17|chr4 (142499674-142499836)
               


               
               171-576, gnl|bosTau2|chr14 (7710609-7711014)
               

               
               171-576, gnl|Hg17|chr4 (142501123-142508436)
               

               
               171-576, gnl|Mm7|chr1 (91203482-91203861)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nmm (0.132802)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)

	3-169, gnl\|bosTau2\|chr17 (9984867-9985031)
	3-169, gnl\|Hg17\|chr4 (142499674-142499836)

	171-576, gnl\|bosTau2\|chr14 (7710609-7711014)
	171-576, gnl\|Hg17\|chr4 (142501123-142508436)
	171-576, gnl\|Mm7\|chr1 (91203482-91203861)