Ss1.1-Pig2-110P21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCAGCCCTTAACAGGCTATTCCTCCTCTACAACTAGAGATGATCATCTTAATTTACTTAT TTGTCTTCCTGTGGGAAGAGGCTCACGGATGGGGATTCAAAAACGGAATTTTTCATAACT CCATATGGCTTGAACAAGCGGCAGGCGTGTACCACAGAGAAGCACGGTCGGGCAAGTACA AGCTTACCTACGCAGAGGCGAAAGCGGTGTGTGAATACGAAGGTGGCCGTCTTGCCACCT ACAAGCAGTTAGAGGCAGCCAGAAAAATTGGATTTCATGTCTGTGCTGCTGGGTGGATGG CTAAGGGCAGAGTTGGCTACCCCATTGTAAAGCCAGGTCCCAACTGTGGATTTGGAAAAA CCGGTATTATTGATTATGGAGTCCGTCTGAACAGAAGCGAAAGATGGGATGCTTATTGCT ACAACCCACATGCAAAAGAGTGTGGTGGTGTCTTTACAGATCCAAAACGAATTTTTAAAT CTCCAGGCTTCCCAAATGAGTATGATGATAACCAAATCTGCTACTGGCACATTAGACTTA AGTATGGCCAGCGTATTCACGTGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCAGCCCTTAACAGGCTATTCCTCCTCTACAACTAGAGATGATCATCTTAATTTACTTAT TTGTCTTCCTGTGGGAAGAGGCTCACGGATGGGGATTCAAAAACGGAATTTTTCATAACT CCATATGGCTTGAACAAGCGGCAGGCGTGTACCACAGAGAAGCACGGTCGGGCAAGTACA AGCTTACCTACGCAGAGGCGAAAGCGGTGTGTGAATACGAAGGTGGCCGTCTTGCCACCT ACAAGCAGTTAGAGGCAGCCAGAAAAATTGGATTTCATGTCTGTGCTGCTGGGTGGATGG CTAAGGGCAGAGTTGGCTACCCCATTGTAAAGCCAGGTCCCAACTGTGGATTTGGAAAAA CCGGTATTATTGATTATGGAGTCCGTCTGAACAGAAGCGAAAGATGGGATGCTTATTGCT ACAACCCACATGCAAAAGAGTGTGGTGGTGTCTTTACAGATCCAAAACGAATTTTTAAAT CTCCAGGCTTCCCAAATGAGTATGATGATAACCAAATCTGCTACTGGCACATTAGACTTA AGTATGGCCAGCGTATTCACGTGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 270-388, + strand, RNAz p=0.903254 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 270-388, + strand, RNAz p=0.903254 |
| Aligned organism(s): 21 entry(ies) | More info |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
| 1-132, gnl|bosTau2|chr2 (9110707-9110839) | |
| 1-132, gnl|Hg17|chr2 (152039649-152039782) | |
| 1-132, gnl|Mm7|chr2 (52045449-52045580) | |
| 270-432, gnl|bosTau2|chr2 (9116747-9116909) | |
| 270-432, gnl|canFam2|chr19 (55634807-55635005) | |
| 270-432, gnl|danRer3|chr9 (15049608-15049402) | |
| 270-432, gnl|dasNov1|scaffold_58108 (460-659) | |
| 270-432, gnl|echTel1|scaffold_27253 (3164-3357) | |
| 270-432, gnl|fr1|chrUn (201846303-201846098) | |
| 270-432, gnl|galGal2|chr7 (35796606-35796802) | |
| 270-432, gnl|hg17|chr2 (152048048-152048246) | |
| 270-432, gnl|Hg17|chr2 (152048077-152048239) | |
| 270-432, gnl|loxAfr1|scaffold_75670 (8564-8762) | |
| 270-432, gnl|mm7|chr2 (52054711-52054910) | |
| 270-432, gnl|Mm7|chr2 (52054741-52054903) | |
| 270-432, gnl|monDom2|scaffold_2 (42407635-42407835) | |
| 270-432, gnl|oryCun1|scaffold_97907 (6457-6258) | |
| 270-432, gnl|panTro1|chr13_random (14889637-14889439) | |
| 270-432, gnl|rheMac2|chr12 (14994558-14994756) | |
| 270-432, gnl|tetNig1|chr2 (6798633-6798819) | |
| 270-432, gnl|xenTro1|scaffold_494 (681540-681739) |
| Aligned organism(s): 21 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-132, gnl|bosTau2|chr2 (9110707-9110839) | |
| 1-132, gnl|Hg17|chr2 (152039649-152039782) | |
| 1-132, gnl|Mm7|chr2 (52045449-52045580) | |
| 270-432, gnl|bosTau2|chr2 (9116747-9116909) | |
| 270-432, gnl|canFam2|chr19 (55634807-55635005) | |
| 270-432, gnl|danRer3|chr9 (15049608-15049402) | |
| 270-432, gnl|dasNov1|scaffold_58108 (460-659) | |
| 270-432, gnl|echTel1|scaffold_27253 (3164-3357) | |
| 270-432, gnl|fr1|chrUn (201846303-201846098) | |
| 270-432, gnl|galGal2|chr7 (35796606-35796802) | |
| 270-432, gnl|hg17|chr2 (152048048-152048246) | |
| 270-432, gnl|Hg17|chr2 (152048077-152048239) | |
| 270-432, gnl|loxAfr1|scaffold_75670 (8564-8762) | |
| 270-432, gnl|mm7|chr2 (52054711-52054910) | |
| 270-432, gnl|Mm7|chr2 (52054741-52054903) | |
| 270-432, gnl|monDom2|scaffold_2 (42407635-42407835) | |
| 270-432, gnl|oryCun1|scaffold_97907 (6457-6258) | |
| 270-432, gnl|panTro1|chr13_random (14889637-14889439) | |
| 270-432, gnl|rheMac2|chr12 (14994558-14994756) | |
| 270-432, gnl|tetNig1|chr2 (6798633-6798819) | |
| 270-432, gnl|xenTro1|scaffold_494 (681540-681739) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.183925) | |
| ese (0.126502) | |
| med (0.116252) |