Non-Coding RNA Search

Ss1.1-Pig2-111E03.5

Sequence:


               
               AAAAAATTGAAAAAGAAACCCTACAAGCAGAGGAGGACCGGGCCAAGGCCATGGCTGTGA
ACAAGCAGCTCCGGAAGCAGCTGGCGGAGTTCCGGGTGCCGCAGGTGATGTTGTACGTCC
AGGAGAAGATCCGAAATGGGGACCTGGAGAAGACCATCAGGATGTGGGAGAGGAAAGTGG
AGATCGCAGAGATGTCCTTAAAAGGCTACCGCAAGGCTTGGAATAAAATGAAAACCACCA
ATGAGCAGTTGCAGGCAATTTGCCCCCCTGGGAAATAGCGAGAGGCAGGCTACGGCTGCA
CCAAAAAGTGACCCATTAAAGTAATCAGCCCCTTTCTAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAATTGAAAAAGAAACCCTACAAGCAGAGGAGGACCGGGCCAAGGCCATGGCTGTGA
ACAAGCAGCTCCGGAAGCAGCTGGCGGAGTTCCGGGTGCCGCAGGTGATGTTGTACGTCC
AGGAGAAGATCCGAAATGGGGACCTGGAGAAGACCATCAGGATGTGGGAGAGGAAAGTGG
AGATCGCAGAGATGTCCTTAAAAGGCTACCGCAAGGCTTGGAATAAAATGAAAACCACCA
ATGAGCAGTTGCAGGCAATTTGCCCCCCTGGGAAATAGCGAGAGGCAGGCTACGGCTGCA
CCAAAAAGTGACCCATTAAAGTAATCAGCCCCTTTCTAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55644657|ref|XP_523504.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55644657|ref|XP_523504.1|

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               34-194, gnl|bosTau2|chr18 (23019656-23019816)
               

               
               34-194, gnl|canFam2|chr2 (61213113-61212938)
               

               
               34-194, gnl|danRer3|chrNA (226241583-226241409)
               

               
               34-194, gnl|dasNov1|scaffold_35023 (5352-5527)
               

               
               34-194, gnl|echTel1|scaffold_223623 (8051-7876)
               

               
               34-194, gnl|hg17|chr16 (56869873-56870048)
               

               
               34-194, gnl|Hg17|chr16 (56869885-56870045)
               

               
               34-194, gnl|loxAfr1|scaffold_8201 (33340-33166)
               

               
               34-194, gnl|mm7|chr8 (94146249-94146422)
               

               
               34-194, gnl|Mm7|chr8 (94146260-94146419)
               

               
               34-194, gnl|monDom2|scaffold_63 (7936538-7936713)
               

               
               34-194, gnl|oryCun1|scaffold_128285 (4228-4053)
               

               
               34-194, gnl|panTro1|chr18_random (32490056-32489881)
               

               
               34-194, gnl|rheMac2|chr20 (56627950-56628125)
               

               
               34-194, gnl|rn3|chr19 (9961499-9961327)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               34-194, gnl|bosTau2|chr18 (23019656-23019816)
               

               
               34-194, gnl|canFam2|chr2 (61213113-61212938)
               

               
               34-194, gnl|danRer3|chrNA (226241583-226241409)
               

               
               34-194, gnl|dasNov1|scaffold_35023 (5352-5527)
               

               
               34-194, gnl|echTel1|scaffold_223623 (8051-7876)
               

               
               34-194, gnl|hg17|chr16 (56869873-56870048)
               

               
               34-194, gnl|Hg17|chr16 (56869885-56870045)
               

               
               34-194, gnl|loxAfr1|scaffold_8201 (33340-33166)
               

               
               34-194, gnl|mm7|chr8 (94146249-94146422)
               

               
               34-194, gnl|Mm7|chr8 (94146260-94146419)
               

               
               34-194, gnl|monDom2|scaffold_63 (7936538-7936713)
               

               
               34-194, gnl|oryCun1|scaffold_128285 (4228-4053)
               

               
               34-194, gnl|panTro1|chr18_random (32490056-32489881)
               

               
               34-194, gnl|rheMac2|chr20 (56627950-56628125)
               

               
               34-194, gnl|rn3|chr19 (9961499-9961327)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jej (0.0989218)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.0989218)

	34-194, gnl\|bosTau2\|chr18 (23019656-23019816)
	34-194, gnl\|canFam2\|chr2 (61213113-61212938)
	34-194, gnl\|danRer3\|chrNA (226241583-226241409)
	34-194, gnl\|dasNov1\|scaffold_35023 (5352-5527)
	34-194, gnl\|echTel1\|scaffold_223623 (8051-7876)
	34-194, gnl\|hg17\|chr16 (56869873-56870048)
	34-194, gnl\|Hg17\|chr16 (56869885-56870045)
	34-194, gnl\|loxAfr1\|scaffold_8201 (33340-33166)
	34-194, gnl\|mm7\|chr8 (94146249-94146422)
	34-194, gnl\|Mm7\|chr8 (94146260-94146419)
	34-194, gnl\|monDom2\|scaffold_63 (7936538-7936713)
	34-194, gnl\|oryCun1\|scaffold_128285 (4228-4053)
	34-194, gnl\|panTro1\|chr18_random (32490056-32489881)
	34-194, gnl\|rheMac2\|chr20 (56627950-56628125)
	34-194, gnl\|rn3\|chr19 (9961499-9961327)