Ss1.1-Pig2-111F06.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGCTTGGCTACAACGAGGAGCAGATTCACAAGCTGGATAAGATGAATTTTAGTCATTTG GCCAAAAGGCTTCTGCAGGTGTTCCAGGAGGAGCGTGTGCAGAAGTATCAGGCGTCCCTG GTCACACACGGCAAGCGAATGAGGGTGGTACATGAGACCAGGAACCACCTGCGCCTGGTG GGCTGCTCCGTGGCCGCCTGTAACACCCAAGCCCAGGGAGCCCAGGAAAGCCTCAGCCAG ATCCTTGACCAGCTAGCTCACCAGCTCCTTCAGGACAGAACACGGGGGGCTCAGGCCTCA CCACCCCTTATGGCTACTTATCCCAATCCTGGACTAAAGGACCTGGTTCTACACATGCAG GAACTCTGTGAGGAGATGAAGCTGCTGGCGTGCGACCTCCAAGACAACAACCGCATCATC GAAGGGTTGAATAGGGTCCCGGCGGCTCCTGACATCTGAGCTCTGGGAGGTACGCGAGGC ATCCTGAAGCATTAGACTCCTTCAAACACTGCTTTCCTGTCTACACTGTGGGACCCAACA CGGGACGATGCCTGGTCCCATCTCATCAGCCTACCTCCCTCCTGGCTGCCAGCCAGGAGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGCTTGGCTACAACGAGGAGCAGATTCACAAGCTGGATAAGATGAATTTTAGTCATTTG GCCAAAAGGCTTCTGCAGGTGTTCCAGGAGGAGCGTGTGCAGAAGTATCAGGCGTCCCTG GTCACACACGGCAAGCGAATGAGGGTGGTACATGAGACCAGGAACCACCTGCGCCTGGTG GGCTGCTCCGTGGCCGCCTGTAACACCCAAGCCCAGGGAGCCCAGGAAAGCCTCAGCCAG ATCCTTGACCAGCTAGCTCACCAGCTCCTTCAGGACAGAACACGGGGGGCTCAGGCCTCA CCACCCCTTATGGCTACTTATCCCAATCCTGGACTAAAGGACCTGGTTCTACACATGCAG GAACTCTGTGAGGAGATGAAGCTGCTGGCGTGCGACCTCCAAGACAACAACCGCATCATC GAAGGGTTGAATAGGGTCCCGGCGGCTCCTGACATCTGAGCTCTGGGAGGTACGCGAGGC ATCCTGAAGCATTAGACTCCTTCAAACACTGCTTTCCTGTCTACACTGTGGGACCCAACA CGGGACGATGCCTGGTCCCATCTCATCAGCCTACCTCCCTCCTGGCTGCCAGCCAGGAGA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 44-599, - strand, RNAz p=0.972859 | |
| 238-353, - strand, RNAz p=0.994843 | |
| 254-353, - strand, RNAz p=0.579602 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 44-599, - strand, RNAz p=0.972859 | |
| 238-353, - strand, RNAz p=0.994843 | |
| 254-353, - strand, RNAz p=0.579602 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of AK057159, - |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 44-144, gnl|bosTau2|chr16 (4248017-4248117) | |
| 44-144, gnl|canFam2|chr38 (5767065-5767264) | |
| 44-144, gnl|echTel1|scaffold_206891 (373-559) | |
| 44-144, gnl|hg17|chr1 (203053283-203053486) | |
| 44-144, gnl|Hg17|chr1 (203053378-203053478) | |
| 44-144, gnl|loxAfr1|scaffold_17353 (21620-21417) | |
| 44-144, gnl|mm7|chr1 (131163478-131163288) | |
| 44-144, gnl|Mm7|chr1 (131163400-131163300) | |
| 44-144, gnl|monDom2|scaffold_13 (8455534-8455734) | |
| 44-144, gnl|oryCun1|scaffold_141640 (471-671) | |
| 44-144, gnl|panTro1|chr1 (186637502-186637705) | |
| 44-144, gnl|rheMac2|chr1 (163871600-163871407) | |
| 44-144, gnl|rn3|chr13 (44216487-44216293) | |
| 238-353, gnl|bosTau2|chr16 (4250569-4250684) | |
| 238-353, gnl|canFam2|chr38 (5769573-5769731) | |
| 238-353, gnl|echTel1|scaffold_206891 (3133-3278) | |
| 238-353, gnl|hg17|chr1 (203054968-203055126) | |
| 238-353, gnl|Hg17|chr1 (203054991-203055106) | |
| 238-353, gnl|loxAfr1|scaffold_17353 (18921-18755) | |
| 238-353, gnl|mm7|chr1 (131161370-131161222) | |
| 238-353, gnl|Mm7|chr1 (131161345-131161236) | |
| 238-353, gnl|monDom2|scaffold_13 (8458174-8458332) | |
| 238-353, gnl|panTro1|chr1 (186639182-186639340) | |
| 238-353, gnl|rheMac2|chr1 (163869935-163869777) | |
| 238-353, gnl|rn3|chr13 (44214347-44214199) | |
| 433-599, gnl|bosTau2|chr16 (4252561-4252723) | |
| 433-599, gnl|canFam2|chr38 (5771661-5772123) | |
| 433-599, gnl|dasNov1|scaffold_74812 (3861-3450) | |
| 433-599, gnl|echTel1|scaffold_255159 (807-1256) | |
| 433-599, gnl|hg17|chr1 (203057821-203058273) | |
| 433-599, gnl|Hg17|chr1 (203057847-203058009) | |
| 433-599, gnl|loxAfr1|scaffold_17353 (16482-16023) | |
| 433-599, gnl|mm7|chr1 (131159478-131159062) | |
| 433-599, gnl|Mm7|chr1 (131159450-131159289) | |
| 433-599, gnl|panTro1|chr1 (186642029-186642481) | |
| 433-599, gnl|rheMac2|chr1 (163867024-163866571) | |
| 433-599, gnl|rn3|chr13 (44212428-44212001) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 44-144, gnl|bosTau2|chr16 (4248017-4248117) | |
| 44-144, gnl|canFam2|chr38 (5767065-5767264) | |
| 44-144, gnl|echTel1|scaffold_206891 (373-559) | |
| 44-144, gnl|hg17|chr1 (203053283-203053486) | |
| 44-144, gnl|Hg17|chr1 (203053378-203053478) | |
| 44-144, gnl|loxAfr1|scaffold_17353 (21620-21417) | |
| 44-144, gnl|mm7|chr1 (131163478-131163288) | |
| 44-144, gnl|Mm7|chr1 (131163400-131163300) | |
| 44-144, gnl|monDom2|scaffold_13 (8455534-8455734) | |
| 44-144, gnl|oryCun1|scaffold_141640 (471-671) | |
| 44-144, gnl|panTro1|chr1 (186637502-186637705) | |
| 44-144, gnl|rheMac2|chr1 (163871600-163871407) | |
| 44-144, gnl|rn3|chr13 (44216487-44216293) | |
| 238-353, gnl|bosTau2|chr16 (4250569-4250684) | |
| 238-353, gnl|canFam2|chr38 (5769573-5769731) | |
| 238-353, gnl|echTel1|scaffold_206891 (3133-3278) | |
| 238-353, gnl|hg17|chr1 (203054968-203055126) | |
| 238-353, gnl|Hg17|chr1 (203054991-203055106) | |
| 238-353, gnl|loxAfr1|scaffold_17353 (18921-18755) | |
| 238-353, gnl|mm7|chr1 (131161370-131161222) | |
| 238-353, gnl|Mm7|chr1 (131161345-131161236) | |
| 238-353, gnl|monDom2|scaffold_13 (8458174-8458332) | |
| 238-353, gnl|panTro1|chr1 (186639182-186639340) | |
| 238-353, gnl|rheMac2|chr1 (163869935-163869777) | |
| 238-353, gnl|rn3|chr13 (44214347-44214199) | |
| 433-599, gnl|bosTau2|chr16 (4252561-4252723) | |
| 433-599, gnl|canFam2|chr38 (5771661-5772123) | |
| 433-599, gnl|dasNov1|scaffold_74812 (3861-3450) | |
| 433-599, gnl|echTel1|scaffold_255159 (807-1256) | |
| 433-599, gnl|hg17|chr1 (203057821-203058273) | |
| 433-599, gnl|Hg17|chr1 (203057847-203058009) | |
| 433-599, gnl|loxAfr1|scaffold_17353 (16482-16023) | |
| 433-599, gnl|mm7|chr1 (131159478-131159062) | |
| 433-599, gnl|Mm7|chr1 (131159450-131159289) | |
| 433-599, gnl|panTro1|chr1 (186642029-186642481) | |
| 433-599, gnl|rheMac2|chr1 (163867024-163866571) | |
| 433-599, gnl|rn3|chr13 (44212428-44212001) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ece (0.229305) | |
| mcp (0.170648) |