Ss1.1-Pig2-111L16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACAGTGCTGTCTCTAGTGGTCCAGGAGCCGGGGAGTGGAAACATCACCGTGGGCCAGAGC CATGCACGGATGCTGCTGGACTGGGCTGTGGCAGCTGGAGCTGGGAAGTCTGACCCCACC GTGGTAGGGATCCTCTCGATCCCGAACATGCAGAAACTGCTGTCCAACTCCTCCTTGGAC CTGGACTTGGAGAAGAAAGCTAAGTTGGAAGAGTGCTATGAAAGTTCTGTCCACGGCGCC CAGCTCAGGCTTCTCTCCGCTGTGAACTCGGTCTTTCTGAGCAACACAAACACAGATAAA CTCGACTCCCCCGTCACCTTTGCCTTCTCCCATCTTCCTGGGACTCAAGAGCAGAAAGAG CACGGGCCACGGGAGGAGCGGATCTGTGCCTTCTGGAAGCATGACGGCAGCAATGGTGGA CACTGGGCCACCTCGGGCTGCAGGATTCTGGGCAACGGGAATGATAGCACCACCTGCCAA TGCAATCACCTGAGCAGCTTTGCCATCCTCGTGGCTCACTACAACGTGGAGGACCCGAAG CTGGCCCTGATCACTAAGGTGGGCCTGTCGCTGTCGCTGGTCTGCCTGCTGCTATGCATT CTCACCTTCCTGCTGGTGCGGCCCATTCAGGGCTCGCGCACAACCGTGCACCTGCACCTC TGCATCTGCCTCTTCGTGGGCTCTGCCATCTTCCTGGCGGGCATCGAGAATGAAGGAGGC CAGGTGGGGCTGCGCTGCAGCCTGGTGGCCGGGCTGCTGCACTACTGGTTCCTGGCTGCC TTCTGCTGGATGAGCCTCGAGGGCATGGAGCTTTACTTCCTGGTGGTGCGTGTGTTCCAA GGCCAAGGCCTGAGAAAGCGCTGGCTCTGCCTCATTGGCTACGGCGTGCCCCTGGTCATC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACAGTGCTGTCTCTAGTGGTCCAGGAGCCGGGGAGTGGAAACATCACCGTGGGCCAGAGC CATGCACGGATGCTGCTGGACTGGGCTGTGGCAGCTGGAGCTGGGAAGTCTGACCCCACC GTGGTAGGGATCCTCTCGATCCCGAACATGCAGAAACTGCTGTCCAACTCCTCCTTGGAC CTGGACTTGGAGAAGAAAGCTAAGTTGGAAGAGTGCTATGAAAGTTCTGTCCACGGCGCC CAGCTCAGGCTTCTCTCCGCTGTGAACTCGGTCTTTCTGAGCAACACAAACACAGATAAA CTCGACTCCCCCGTCACCTTTGCCTTCTCCCATCTTCCTGGGACTCAAGAGCAGAAAGAG CACGGGCCACGGGAGGAGCGGATCTGTGCCTTCTGGAAGCATGACGGCAGCAATGGTGGA CACTGGGCCACCTCGGGCTGCAGGATTCTGGGCAACGGGAATGATAGCACCACCTGCCAA TGCAATCACCTGAGCAGCTTTGCCATCCTCGTGGCTCACTACAACGTGGAGGACCCGAAG CTGGCCCTGATCACTAAGGTGGGCCTGTCGCTGTCGCTGGTCTGCCTGCTGCTATGCATT CTCACCTTCCTGCTGGTGCGGCCCATTCAGGGCTCGCGCACAACCGTGCACCTGCACCTC TGCATCTGCCTCTTCGTGGGCTCTGCCATCTTCCTGGCGGGCATCGAGAATGAAGGAGGC CAGGTGGGGCTGCGCTGCAGCCTGGTGGCCGGGCTGCTGCACTACTGGTTCCTGGCTGCC TTCTGCTGGATGAGCCTCGAGGGCATGGAGCTTTACTTCCTGGTGGTGCGTGTGTTCCAA GGCCAAGGCCTGAGAAAGCGCTGGCTCTGCCTCATTGGCTACGGCGTGCCCCTGGTCATC |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 530-735, gnl|bosTau2|chr7 (7449882-7449677) | |
| 530-735, gnl|canFam2|chr20 (50859316-50859121) | |
| 530-735, gnl|canFam2|chr20 (51208408-51208208) | |
| 530-735, gnl|danRer3|chr3 (4398155-4398353) | |
| 530-735, gnl|danRer3|chr3 (4398355-4398175) | |
| 530-735, gnl|dasNov1|scaffold_58050 (9066-8889) | |
| 530-735, gnl|dasNov1|scaffold_58050 (8887-9087) | |
| 530-735, gnl|echTel1|scaffold_169833 (570-375) | |
| 530-735, gnl|echTel1|scaffold_233638 (564-764) | |
| 530-735, gnl|fr1|chrUn (84180838-84181045) | |
| 530-735, gnl|fr1|chrUn (243515764-243515590) | |
| 530-735, gnl|hg17|chr19 (14724140-14724335) | |
| 530-735, gnl|hg17|chr19 (14377557-14377757) | |
| 530-735, gnl|Hg17|chr19 (14377558-14377763) | |
| 530-735, gnl|loxAfr1|scaffold_126089 (3801-3601) | |
| 530-735, gnl|loxAfr1|scaffold_30579 (11584-11779) | |
| 530-735, gnl|mm7|chr17 (53961609-53961405) | |
| 530-735, gnl|mm7|chr8 (82303778-82303578) | |
| 530-735, gnl|Mm7|chr8 (82303775-82303573) | |
| 530-735, gnl|monDom2|scaffold_85 (5790307-5790112) | |
| 530-735, gnl|monDom2|scaffold_85 (5902551-5902729) | |
| 530-735, gnl|oryCun1|scaffold_100542 (4360-4148) | |
| 530-735, gnl|oryCun1|scaffold_103269 (4485-4680) | |
| 530-735, gnl|panTro1|chr20 (15368557-15368752) | |
| 530-735, gnl|panTro1|chr20 (15016290-15016490) | |
| 530-735, gnl|rheMac2|chr19 (14472874-14473069) | |
| 530-735, gnl|rheMac2|chr19 (14106136-14106336) | |
| 530-735, gnl|rn3|chr19 (26111785-26111985) | |
| 530-735, gnl|rn3|chrUn (13569857-13569653) | |
| 530-735, gnl|tetNig1|chr1 (12623711-12623914) | |
| 530-735, gnl|tetNig1|chrUn_random (56110335-56110156) | |
| 530-735, gnl|xenTro1|scaffold_115 (263924-263729) | |
| 530-735, gnl|xenTro1|scaffold_115 (580736-580538) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 530-735, gnl|bosTau2|chr7 (7449882-7449677) | |
| 530-735, gnl|canFam2|chr20 (50859316-50859121) | |
| 530-735, gnl|canFam2|chr20 (51208408-51208208) | |
| 530-735, gnl|danRer3|chr3 (4398155-4398353) | |
| 530-735, gnl|danRer3|chr3 (4398355-4398175) | |
| 530-735, gnl|dasNov1|scaffold_58050 (9066-8889) | |
| 530-735, gnl|dasNov1|scaffold_58050 (8887-9087) | |
| 530-735, gnl|echTel1|scaffold_169833 (570-375) | |
| 530-735, gnl|echTel1|scaffold_233638 (564-764) | |
| 530-735, gnl|fr1|chrUn (84180838-84181045) | |
| 530-735, gnl|fr1|chrUn (243515764-243515590) | |
| 530-735, gnl|hg17|chr19 (14724140-14724335) | |
| 530-735, gnl|hg17|chr19 (14377557-14377757) | |
| 530-735, gnl|Hg17|chr19 (14377558-14377763) | |
| 530-735, gnl|loxAfr1|scaffold_126089 (3801-3601) | |
| 530-735, gnl|loxAfr1|scaffold_30579 (11584-11779) | |
| 530-735, gnl|mm7|chr17 (53961609-53961405) | |
| 530-735, gnl|mm7|chr8 (82303778-82303578) | |
| 530-735, gnl|Mm7|chr8 (82303775-82303573) | |
| 530-735, gnl|monDom2|scaffold_85 (5790307-5790112) | |
| 530-735, gnl|monDom2|scaffold_85 (5902551-5902729) | |
| 530-735, gnl|oryCun1|scaffold_100542 (4360-4148) | |
| 530-735, gnl|oryCun1|scaffold_103269 (4485-4680) | |
| 530-735, gnl|panTro1|chr20 (15368557-15368752) | |
| 530-735, gnl|panTro1|chr20 (15016290-15016490) | |
| 530-735, gnl|rheMac2|chr19 (14472874-14473069) | |
| 530-735, gnl|rheMac2|chr19 (14106136-14106336) | |
| 530-735, gnl|rn3|chr19 (26111785-26111985) | |
| 530-735, gnl|rn3|chrUn (13569857-13569653) | |
| 530-735, gnl|tetNig1|chr1 (12623711-12623914) | |
| 530-735, gnl|tetNig1|chrUn_random (56110335-56110156) | |
| 530-735, gnl|xenTro1|scaffold_115 (263924-263729) | |
| 530-735, gnl|xenTro1|scaffold_115 (580736-580538) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.417711) | |
| jca (0.22792) | |
| nlu (0.191681) |