Non-Coding RNA Search

Ss1.1-Pig2-112F06.5

Sequence:


               
               TCACTTCATAGCCTTCAGCCACCTCAAATACTTTTTTGAGGTTTTCATTTTAGCGTAAAC
TGGCAGGGCTCTCCTTGTATTGGGTGGCTCCGCGGGGCAGGTCCCCTGGGAAGCCACCTG
AGTCCCTGCTCAACAGAATGCAGAAATAGCTGCATCTGTGTTTCTTCCTTGAGAAACTCA
GCCTCCCACCACTGGGAACTTTCCTCCCGAGAGGAAACTAGCGAGAGAAGTTCGTTTAAC
CATCTAGAAACATTCCTAATCGCTTTCTAATCCACGTCCCTTATTCACCGCACCAATTAC
ACTCTCCGAGGTAAGCAAGGAAAGATGCGAATTGTGATATTGGCGCCATAAATCGATATG
TACCCAGAAACAGTTATGTTCTGAATTAATGGCTTTAACCTGTTCATTGTAAAAAGTGCC
TTGGACTTCAATCTAAAGAGGTCAGTACAAATATATATGTGTGTGTGTGTGTGTGACATA
TGTAGGCAAATATTTACATATTTATACGTACATAGGTGCACACACATATACCTGCACATT
CATATATAATATATACGTACATATATAAATGCTTCATAATATATCATATTGCTATTCGCA
GCTCCATTTCTTTTGTCTGGTCCTATGTTTATTTGTTTAGTGAGACCTTTACATAGAGAG
GTTCTATTCAGGACATCGATGTATTTTTTTGTTTGTTTTTTACTTTTTATTAAAAAGGTA
AAGGATATTAAAAAACAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCACTTCATAGCCTTCAGCCACCTCAAATACTTTTTTGAGGTTTTCATTTTAGCGTAAAC
TGGCAGGGCTCTCCTTGTATTGGGTGGCTCCGCGGGGCAGGTCCCCTGGGAAGCCACCTG
AGTCCCTGCTCAACAGAATGCAGAAATAGCTGCATCTGTGTTTCTTCCTTGAGAAACTCA
GCCTCCCACCACTGGGAACTTTCCTCCCGAGAGGAAACTAGCGAGAGAAGTTCGTTTAAC
CATCTAGAAACATTCCTAATCGCTTTCTAATCCACGTCCCTTATTCACCGCACCAATTAC
ACTCTCCGAGGTAAGCAAGGAAAGATGCGAATTGTGATATTGGCGCCATAAATCGATATG
TACCCAGAAACAGTTATGTTCTGAATTAATGGCTTTAACCTGTTCATTGTAAAAAGTGCC
TTGGACTTCAATCTAAAGAGGTCAGTACAAATATATATGTGTGTGTGTGTGTGTGACATA
TGTAGGCAAATATTTACATATTTATACGTACATAGGTGCACACACATATACCTGCACATT
CATATATAATATATACGTACATATATAAATGCTTCATAATATATCATATTGCTATTCGCA
GCTCCATTTCTTTTGTCTGGTCCTATGTTTATTTGTTTAGTGAGACCTTTACATAGAGAG
GTTCTATTCAGGACATCGATGTATTTTTTTGTTTGTTTTTTACTTTTTATTAAAAAGGTA
AAGGATATTAAAAAACAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               50-237, - strand, RNAz p=0.96573
               

               
               396-738, + strand, RNAz p=0.991128

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               50-237, - strand, RNAz p=0.96573
               

               
               396-738, + strand, RNAz p=0.991128

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               460-646, - strand, RNAmicro p=0.995919
               

               
               476-540, + strand, RNAmicro p=0.974191

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               460-646, - strand, RNAmicro p=0.995919
               

               
               476-540, + strand, RNAmicro p=0.974191

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               590-445, BP397630 Homo sapiens pancreatic islet Homo sapiens cDNA clone 
(dbj|BP397630.1|), blast E-value=7e-18, identity=100% 
               

               
               590-454, tg68f05.x1 Soares_NhHMPu_S1 Homo sapiens cDNA clone IMAGE 
(gb|AI399806.1|), blast E-value=7e-21, identity=98.31% 
               

               
               590-454, hr50c05.x1 NCI_CGAP_Kid11 Homo sapiens cDNA clone IMAGE 
(gb|BE048536.1|), blast E-value=7e-21, identity=98.31% 
               

               
               590-454, is33h06.x1 HR85 islet Homo sapiens cDNA clone IMAGE (gb|CB068834.1|), 
blast E-value=2e-18, identity=98.18% 
               

               
               590-683, is33h06.k1 HR85 islet Homo sapiens cDNA clone IMAGE (gb|DN949424.1|), 
blast E-value=1e-34, identity=95.74% 
               

               
               590-683, POSM0605003_A15F porcine skeletal muscle cDNA library (PoSM) Sus 
(gb|DV904435.1|), blast E-value=4.06377e-44, identity=100%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               590-445, BP397630 Homo sapiens pancreatic islet Homo sapiens cDNA clone 
(dbj|BP397630.1|), blast E-value=7e-18, identity=100% 
               

               
               590-454, tg68f05.x1 Soares_NhHMPu_S1 Homo sapiens cDNA clone IMAGE 
(gb|AI399806.1|), blast E-value=7e-21, identity=98.31% 
               

               
               590-454, hr50c05.x1 NCI_CGAP_Kid11 Homo sapiens cDNA clone IMAGE 
(gb|BE048536.1|), blast E-value=7e-21, identity=98.31% 
               

               
               590-454, is33h06.x1 HR85 islet Homo sapiens cDNA clone IMAGE (gb|CB068834.1|), 
blast E-value=2e-18, identity=98.18% 
               

               
               590-683, is33h06.k1 HR85 islet Homo sapiens cDNA clone IMAGE (gb|DN949424.1|), 
blast E-value=1e-34, identity=95.74% 
               

               
               590-683, POSM0605003_A15F porcine skeletal muscle cDNA library (PoSM) Sus 
(gb|DV904435.1|), blast E-value=4.06377e-44, identity=100%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               50-738, gnl|bosTau2|chr3 (8774483-8773800)
               

               
               50-738, gnl|Hg17|chr1 (151485436-151484728)
               

               
               50-738, gnl|Mm7|chr3 (89801172-89801830)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               50-738, gnl|bosTau2|chr3 (8774483-8773800)
               

               
               50-738, gnl|Hg17|chr1 (151485436-151484728)
               

               
               50-738, gnl|Mm7|chr3 (89801172-89801830)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               lin (0.291206)
               

               
               spc (0.113366)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.291206)
               

               
               spc (0.113366)

	50-237, - strand, RNAz p=0.96573
	396-738, + strand, RNAz p=0.991128

	460-646, - strand, RNAmicro p=0.995919
	476-540, + strand, RNAmicro p=0.974191

	590-445, BP397630 Homo sapiens pancreatic islet Homo sapiens cDNA clone (dbj\|BP397630.1\|), blast E-value=7e-18, identity=100%
	590-454, tg68f05.x1 Soares_NhHMPu_S1 Homo sapiens cDNA clone IMAGE (gb\|AI399806.1\|), blast E-value=7e-21, identity=98.31%
	590-454, hr50c05.x1 NCI_CGAP_Kid11 Homo sapiens cDNA clone IMAGE (gb\|BE048536.1\|), blast E-value=7e-21, identity=98.31%
	590-454, is33h06.x1 HR85 islet Homo sapiens cDNA clone IMAGE (gb\|CB068834.1\|), blast E-value=2e-18, identity=98.18%
	590-683, is33h06.k1 HR85 islet Homo sapiens cDNA clone IMAGE (gb\|DN949424.1\|), blast E-value=1e-34, identity=95.74%
	590-683, POSM0605003_A15F porcine skeletal muscle cDNA library (PoSM) Sus (gb\|DV904435.1\|), blast E-value=4.06377e-44, identity=100%

	50-738, gnl\|bosTau2\|chr3 (8774483-8773800)
	50-738, gnl\|Hg17\|chr1 (151485436-151484728)
	50-738, gnl\|Mm7\|chr3 (89801172-89801830)