Non-Coding RNA Search

Ss1.1-Pig2-112G04.5

Sequence:


               
               GCCGCATCCTCTGTGCCTGCCAGGAGCCGGCGTCCCCCGCGTTCCTTGCGCCCGGCCTGG
CCATGGCTTCGGTCGTACTGATGCCGCTCCTGCTGCTGCTGCTGCAGCCTCCACCCGCCA
CCCCCGCGCCGCCTGTTCGCGACCCCTTCGCCCTGCAGCTCGGGGACACGCAGAGCTGCC
AGCTGCGGTGCCGAGACCGCTACCCTAGTCCGCAGCCGGCTCAGGAGCTGGAGGAGGACC
CCACTGAGTCCCCGCATGTGAATGCGTATGATAGGGCCGTGCTGATCAGTGCTTGTGAAC
GAGGCTGCCGCCTCTTCTCCATCTGCCGCTTCGTGGCCAGGAGCTCCAAGCCCAATGCCA
CCCAAGCAGAGTGTGAAGCAGCCTGTGTGGAGGCTTATGTGAAGGAGACGGAGCAGCAGG
CCTGCAGCGAGGGCTGCTGGAGCCAGAACCCACAGCTGGAACCTGAGCCTGAGCTGGAGC
CGGAGCAGAAGAGAAAGGTCCTGGAAGCTCCGAGTGGGGCCCTCTCGCTCCTGGACTTGT
TTTCCACCCTCTGCAATGACCTTGTCAACTCGGCTCAGGGCTTCGTCTCCTCTACCTGGA
CATACTACCTGCAGACTGACAATGGGAAGGTGGTGGTATTCCAGACCCAGCCTGTAGTAG
AGAGCCTGGGGCACGAGGGGACCCGTCTGCAGCGAGTAGAGGTGACCTGGCGGGGATCCC
ACCCTGAGGCCTTGGAGGTGCATGTTGACCCCGTAGGCCCCTTGGACAAGGTAAGGAAGG
CCAAGATTCGAGTCAAGACCAGCAGCAAAGCCAAGATTGAGTCTGATGAGCTTCAGGACA
ATGACTTCCTCAGTTGCATGTCCCGGCGCTCCGGGCTTCCTCGCTGGATCCTGGCCTGCT
GCCTCTTCCTCTCTGTGCTGGTGATGCTGTGGCTGAGCTGCTCCACTCTGGTGACTGCAC
CCGGCCAGCACCTCAAGTTCCAGCCCCTGACTCTGGAGCAGCACAAGGGCTTTATGGTAG
AGCCAGACTGGCCTCTGTACCCTCCCCCATCTCACGCCTTTGCAGACAGCCCCCCACCCT
ACAAGCTGAAGCTGGACCTGACCAAGCTGTAGGCCTCCATTGCCAAGTACAAGGGCTCCT
CGGGCCTTCCTTGCCCTTTGCCTAAGAGGCCAGGTCAGGGTGGGACCATCCTTGGGCTCC
TCCTTCCCCCTTATTCTCCTTCTCTCTCAAGCCCTGCCCCTCACCCCCTGGGTCCTGGGG
TTGCCATGCCCCTGCTGGGAGGGGGGGAATCTGACTCTGGTTCCTCCCTGCCCCCCATCC
CCAGAGCGTGTTACTTTTGTCTTTTATTGTGTAGTTTCTTGAGTATTTGAACCCCAGTTC
TGTGCTGCCTTCCTTCTTCCTCTCTCCCCTCTCTGGGGGGCTGAGGTCACAGGGGAGCCA
CCTTGTGTTAGGGCTTCCCCTTTTCTCTCTACCCCATCTCTGGAGATCTAGCTCCCTGAG
AGGAAGCCCCCTGAGGGAGGAGGTGGTGGGTAGCTCCATACTGGGAAGGCAGATAAGGCT
GGAATTGCAGCATGGGGGTCAGGAGGAATAAACCGTGTATATAAGAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGCATCCTCTGTGCCTGCCAGGAGCCGGCGTCCCCCGCGTTCCTTGCGCCCGGCCTGG
CCATGGCTTCGGTCGTACTGATGCCGCTCCTGCTGCTGCTGCTGCAGCCTCCACCCGCCA
CCCCCGCGCCGCCTGTTCGCGACCCCTTCGCCCTGCAGCTCGGGGACACGCAGAGCTGCC
AGCTGCGGTGCCGAGACCGCTACCCTAGTCCGCAGCCGGCTCAGGAGCTGGAGGAGGACC
CCACTGAGTCCCCGCATGTGAATGCGTATGATAGGGCCGTGCTGATCAGTGCTTGTGAAC
GAGGCTGCCGCCTCTTCTCCATCTGCCGCTTCGTGGCCAGGAGCTCCAAGCCCAATGCCA
CCCAAGCAGAGTGTGAAGCAGCCTGTGTGGAGGCTTATGTGAAGGAGACGGAGCAGCAGG
CCTGCAGCGAGGGCTGCTGGAGCCAGAACCCACAGCTGGAACCTGAGCCTGAGCTGGAGC
CGGAGCAGAAGAGAAAGGTCCTGGAAGCTCCGAGTGGGGCCCTCTCGCTCCTGGACTTGT
TTTCCACCCTCTGCAATGACCTTGTCAACTCGGCTCAGGGCTTCGTCTCCTCTACCTGGA
CATACTACCTGCAGACTGACAATGGGAAGGTGGTGGTATTCCAGACCCAGCCTGTAGTAG
AGAGCCTGGGGCACGAGGGGACCCGTCTGCAGCGAGTAGAGGTGACCTGGCGGGGATCCC
ACCCTGAGGCCTTGGAGGTGCATGTTGACCCCGTAGGCCCCTTGGACAAGGTAAGGAAGG
CCAAGATTCGAGTCAAGACCAGCAGCAAAGCCAAGATTGAGTCTGATGAGCTTCAGGACA
ATGACTTCCTCAGTTGCATGTCCCGGCGCTCCGGGCTTCCTCGCTGGATCCTGGCCTGCT
GCCTCTTCCTCTCTGTGCTGGTGATGCTGTGGCTGAGCTGCTCCACTCTGGTGACTGCAC
CCGGCCAGCACCTCAAGTTCCAGCCCCTGACTCTGGAGCAGCACAAGGGCTTTATGGTAG
AGCCAGACTGGCCTCTGTACCCTCCCCCATCTCACGCCTTTGCAGACAGCCCCCCACCCT
ACAAGCTGAAGCTGGACCTGACCAAGCTGTAGGCCTCCATTGCCAAGTACAAGGGCTCCT
CGGGCCTTCCTTGCCCTTTGCCTAAGAGGCCAGGTCAGGGTGGGACCATCCTTGGGCTCC
TCCTTCCCCCTTATTCTCCTTCTCTCTCAAGCCCTGCCCCTCACCCCCTGGGTCCTGGGG
TTGCCATGCCCCTGCTGGGAGGGGGGGAATCTGACTCTGGTTCCTCCCTGCCCCCCATCC
CCAGAGCGTGTTACTTTTGTCTTTTATTGTGTAGTTTCTTGAGTATTTGAACCCCAGTTC
TGTGCTGCCTTCCTTCTTCCTCTCTCCCCTCTCTGGGGGGCTGAGGTCACAGGGGAGCCA
CCTTGTGTTAGGGCTTCCCCTTTTCTCTCTACCCCATCTCTGGAGATCTAGCTCCCTGAG
AGGAAGCCCCCTGAGGGAGGAGGTGGTGGGTAGCTCCATACTGGGAAGGCAGATAAGGCT
GGAATTGCAGCATGGGGGTCAGGAGGAATAAACCGTGTATATAAGAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61845375|ref|XP_583717.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61845375|ref|XP_583717.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1125-1317, - strand, RNAz p=0.971907
               

               
               1395-1584, - strand, RNAz p=0.998587

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1125-1317, - strand, RNAz p=0.971907
               

               
               1395-1584, - strand, RNAz p=0.998587

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-225, gnl|bosTau2|chr7 (2068538-2068765)
               

               
               1-225, gnl|Hg17|chr19 (18584707-18584940)
               

               
               1-225, gnl|Mm7|chr8 (68942492-68942307)
               


               
               378-485, gnl|bosTau2|chr7 (2069922-2070029)
               

               
               378-485, gnl|Hg17|chr19 (18585910-18586005)
               

               
               378-485, gnl|Mm7|chr8 (68941278-68941177)
               


               
               490-644, gnl|bosTau2|chr7 (2071452-2071606)
               

               
               490-644, gnl|Hg17|chr19 (18587783-18587937)
               

               
               490-644, gnl|Mm7|chr8 (68940969-68940815)
               


               
               747-866, gnl|bosTau2|chr7 (2073249-2073368)
               

               
               747-866, gnl|Hg17|chr19 (18589964-18590083)
               

               
               747-866, gnl|Mm7|chr8 (68939987-68939871)
               


               
               981-1604, gnl|bosTau2|chr7 (2073824-2074445)
               

               
               981-1604, gnl|Hg17|chr19 (18592215-18592845)
               

               
               981-1604, gnl|Mm7|chr8 (68939577-68939020)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-225, gnl|bosTau2|chr7 (2068538-2068765)
               

               
               1-225, gnl|Hg17|chr19 (18584707-18584940)
               

               
               1-225, gnl|Mm7|chr8 (68942492-68942307)
               


               
               378-485, gnl|bosTau2|chr7 (2069922-2070029)
               

               
               378-485, gnl|Hg17|chr19 (18585910-18586005)
               

               
               378-485, gnl|Mm7|chr8 (68941278-68941177)
               


               
               490-644, gnl|bosTau2|chr7 (2071452-2071606)
               

               
               490-644, gnl|Hg17|chr19 (18587783-18587937)
               

               
               490-644, gnl|Mm7|chr8 (68940969-68940815)
               


               
               747-866, gnl|bosTau2|chr7 (2073249-2073368)
               

               
               747-866, gnl|Hg17|chr19 (18589964-18590083)
               

               
               747-866, gnl|Mm7|chr8 (68939987-68939871)
               


               
               981-1604, gnl|bosTau2|chr7 (2073824-2074445)
               

               
               981-1604, gnl|Hg17|chr19 (18592215-18592845)
               

               
               981-1604, gnl|Mm7|chr8 (68939577-68939020)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               hyp (0.85702)
               

               
               fcc (0.791139)
               

               
               fce (0.543183)
               

               
               fhi (0.508733)
               

               
               ece (0.45861)
               

               
               ebs (0.354904)
               

               
               nca (0.273748)
               

               
               eye (0.170503)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hyp (0.85702)
               

               
               fcc (0.791139)
               

               
               fce (0.543183)
               

               
               fhi (0.508733)
               

               
               ece (0.45861)
               

               
               ebs (0.354904)
               

               
               nca (0.273748)
               

               
               eye (0.170503)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)

	1125-1317, - strand, RNAz p=0.971907
	1395-1584, - strand, RNAz p=0.998587

	1-225, gnl\|bosTau2\|chr7 (2068538-2068765)
	1-225, gnl\|Hg17\|chr19 (18584707-18584940)
	1-225, gnl\|Mm7\|chr8 (68942492-68942307)

	378-485, gnl\|bosTau2\|chr7 (2069922-2070029)
	378-485, gnl\|Hg17\|chr19 (18585910-18586005)
	378-485, gnl\|Mm7\|chr8 (68941278-68941177)

	490-644, gnl\|bosTau2\|chr7 (2071452-2071606)
	490-644, gnl\|Hg17\|chr19 (18587783-18587937)
	490-644, gnl\|Mm7\|chr8 (68940969-68940815)

	747-866, gnl\|bosTau2\|chr7 (2073249-2073368)
	747-866, gnl\|Hg17\|chr19 (18589964-18590083)
	747-866, gnl\|Mm7\|chr8 (68939987-68939871)

	981-1604, gnl\|bosTau2\|chr7 (2073824-2074445)
	981-1604, gnl\|Hg17\|chr19 (18592215-18592845)
	981-1604, gnl\|Mm7\|chr8 (68939577-68939020)

	hyp (0.85702)
	fcc (0.791139)
	fce (0.543183)
	fhi (0.508733)
	ece (0.45861)
	ebs (0.354904)
	nca (0.273748)
	eye (0.170503)
	ecc (0.115035)
	jca (0.11396)