Non-Coding RNA Search

Ss1.1-Pig2-112O10.5

Sequence:


               
               GCAGTGAGGGCAACCCTTTCTCCTCTGGCAGGGGAGCTAGGTCTGTGACATCTGGACAGC
ACCGTGCAGTGTTACCTCCTGTCCCGCCTTGGGTCTTGCTGCCACGGCATGCCACACTGA
AGTAGTTATGGACTTCTGCGCCCAGCTACTTGGTTTCTTCATTGTCTGCTCTGCAGTTGA
ATATATATCTATATTCCTGTCACTCAAGCATCATGTGCATTCCTGGCTCATCCACACGCA
TACTGTGTCACCTGAACTGTGATGCAGGTCACCTGGAACAGTCTGGAGCGATACTGTGCG
GTGCTGCCCTCCGTGGATCTGGACGTGACCGCCTCATTTTTGTCTTGCAGCAGGTGTGTG
GCCCTGGCTGGTCTCTTGGCAGGAGTCTTTAGAACCGGACCGCCGTGCTCTGCTGTCCGT
TCTGCCGGCCGCGCTGCCTGAGAAGGTGGCTGCTTCCTCCCTCCTCCCCAAATCAGGAAC
TCCACAAGTAGGGCTGCCCTTTGGTTTCCAGAAGCTGCCAGCGGGTTCCAGTGTGTTGCA
TTATGATATCCATGATTTTTTATTATATTTTTTTCTTCTTGTTTCTTTTTATATTATATA
TTTAAAGGCAGTATCTTTTGTACTGTGAATCTGCAGTAGATGAGGCATAATGCACTTTTT
GGCCAGGAGCATCGCTAGAAACAGTGCTGGCAGTTCCTGCAGGTGAGGCAGGCACTGGCT
CAGCCCATGTGTCCCGTCAGGTAGTAGTGAGGAAAGGACTGAATTGGTTGGCTGGCCAGC
TGCAGGGTGGTGTAGCCCAGGCCCCCTCTGCATCGCAGCCCAGCCCCTCCCCTGTCCCTG
CCCCCATCTTACAGTTGTCCTCTTGTTTTTATTACTACCTAGGCCACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGTGAGGGCAACCCTTTCTCCTCTGGCAGGGGAGCTAGGTCTGTGACATCTGGACAGC
ACCGTGCAGTGTTACCTCCTGTCCCGCCTTGGGTCTTGCTGCCACGGCATGCCACACTGA
AGTAGTTATGGACTTCTGCGCCCAGCTACTTGGTTTCTTCATTGTCTGCTCTGCAGTTGA
ATATATATCTATATTCCTGTCACTCAAGCATCATGTGCATTCCTGGCTCATCCACACGCA
TACTGTGTCACCTGAACTGTGATGCAGGTCACCTGGAACAGTCTGGAGCGATACTGTGCG
GTGCTGCCCTCCGTGGATCTGGACGTGACCGCCTCATTTTTGTCTTGCAGCAGGTGTGTG
GCCCTGGCTGGTCTCTTGGCAGGAGTCTTTAGAACCGGACCGCCGTGCTCTGCTGTCCGT
TCTGCCGGCCGCGCTGCCTGAGAAGGTGGCTGCTTCCTCCCTCCTCCCCAAATCAGGAAC
TCCACAAGTAGGGCTGCCCTTTGGTTTCCAGAAGCTGCCAGCGGGTTCCAGTGTGTTGCA
TTATGATATCCATGATTTTTTATTATATTTTTTTCTTCTTGTTTCTTTTTATATTATATA
TTTAAAGGCAGTATCTTTTGTACTGTGAATCTGCAGTAGATGAGGCATAATGCACTTTTT
GGCCAGGAGCATCGCTAGAAACAGTGCTGGCAGTTCCTGCAGGTGAGGCAGGCACTGGCT
CAGCCCATGTGTCCCGTCAGGTAGTAGTGAGGAAAGGACTGAATTGGTTGGCTGGCCAGC
TGCAGGGTGGTGTAGCCCAGGCCCCCTCTGCATCGCAGCCCAGCCCCTCCCCTGTCCCTG
CCCCCATCTTACAGTTGTCCTCTTGTTTTTATTACTACCTAGGCCACC

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               482-660, gnl|bosTau2|chr17 (35069140-35068957)
               

               
               482-660, gnl|Hg17|chr12 (107679178-107679018)
               

               
               482-660, gnl|Mm7|chr5 (113159216-113159034)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               482-660, gnl|bosTau2|chr17 (35069140-35068957)
               

               
               482-660, gnl|Hg17|chr12 (107679178-107679018)
               

               
               482-660, gnl|Mm7|chr5 (113159216-113159034)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               spl (0.286369)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.286369)
               

               
               fty (0.17584)
               

               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               cst (0.140036)
               

               
               pla (0.133672)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

	482-660, gnl\|bosTau2\|chr17 (35069140-35068957)
	482-660, gnl\|Hg17\|chr12 (107679178-107679018)
	482-660, gnl\|Mm7\|chr5 (113159216-113159034)

	spl (0.286369)
	fty (0.17584)
	mcp (0.170648)
	fhi (0.169578)
	cst (0.140036)
	pla (0.133672)
	cly (0.120642)
	eru (0.120048)
	ecc (0.115035)