Ss1.1-Pig2-113B16.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTTAAGTTTTGCCGAGACGTGGTTATGCCTAATTTATTTATAAAAGGGGAAGTGGAATC ATTAAAGTAATAATAATTATTAATAACAGTAATGGTAGCCGAGCGGCGCCCGGGGGGAAC CTGTGTTCTGCGGGGTGGTCCCCGCAGCCAGCGACGTCCGGGGTCTTAATGGGATTATTT TTGCTCGTCTTGAGATTTTTTCAGTCCTATTTAGCTGGTGAAACCCTAGCTTGTTCTTGA TACACGAACCTATTTATTCTTGTGGTTTTTAAGTCCTCCCCAACCTCCCCGCTCCCCTCC AGCAGGGCAGGCCCCCCCAGCGGGTCCACCCCTCTCCCTCTGTTTTCTTGGGGCTTCTCC CCTCTGCCCTCCGCGCGCAGGGACACGTGTCCACACGTGGGCAGCGTGGCGGAGGCATCT GTGAGCAATAAGGTCTGGGTTTGTCCCCCACCCTGGGGGGGGACCGGGCTCTGGAGAGGG GGCACCTCCCCACACCCCCTCACTGAGGCCTGGGCCCCTGCCACCCCCCAAGACTGGGAG GGGACTTCTTTTCCTGTGGGGAAGGGGCTCAGCCCCTCCAGCCCTCCCTTCATCTTATTT ATTCGGATGGTTTCAAATCACGACAGAGTCCATGTTGGAGGTGATAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTTAAGTTTTGCCGAGACGTGGTTATGCCTAATTTATTTATAAAAGGGGAAGTGGAATC ATTAAAGTAATAATAATTATTAATAACAGTAATGGTAGCCGAGCGGCGCCCGGGGGGAAC CTGTGTTCTGCGGGGTGGTCCCCGCAGCCAGCGACGTCCGGGGTCTTAATGGGATTATTT TTGCTCGTCTTGAGATTTTTTCAGTCCTATTTAGCTGGTGAAACCCTAGCTTGTTCTTGA TACACGAACCTATTTATTCTTGTGGTTTTTAAGTCCTCCCCAACCTCCCCGCTCCCCTCC AGCAGGGCAGGCCCCCCCAGCGGGTCCACCCCTCTCCCTCTGTTTTCTTGGGGCTTCTCC CCTCTGCCCTCCGCGCGCAGGGACACGTGTCCACACGTGGGCAGCGTGGCGGAGGCATCT GTGAGCAATAAGGTCTGGGTTTGTCCCCCACCCTGGGGGGGGACCGGGCTCTGGAGAGGG GGCACCTCCCCACACCCCCTCACTGAGGCCTGGGCCCCTGCCACCCCCCAAGACTGGGAG GGGACTTCTTTTCCTGTGGGGAAGGGGCTCAGCCCCTCCAGCCCTCCCTTCATCTTATTT ATTCGGATGGTTTCAAATCACGACAGAGTCCATGTTGGAGGTGATAAA |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 41-187, - strand, RNAz p=0.995191 | |
| 265-583, - strand, RNAz p=0.999265 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 41-187, - strand, RNAz p=0.995191 | |
| 265-583, - strand, RNAz p=0.999265 |
| Similar Transcript(s): 12 entry(ies) | More info |
| Similar Transcript(s): 12 entry(ies) | Help | Less info |
| 41-187, CR939011 Normalized and Subtracted bovine endometrium tissues (emb|CR939011.1|), blast E-value=0, identity=93.33% | |
| 41-111, 64787 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|AW485287.1|), blast E-value=8e-31, identity=100% | |
| 41-159, UI-H-CO0-arl-d-05-0-UI.s1 NCI_CGAP_Sub9 Homo sapiens cDNA clone (gb|BQ028443.1|), blast E-value=3e-27, identity=89.08% | |
| 48-187, BE04021B2E01 BE04 Normalized and Subtracted bovine embryonic and (gb|CN440179.1|), blast E-value=2.00386e-43, identity=92.31% | |
| 41-187, BovGen_15528 normal cattle brain Bos taurus cDNA clone (gb|CO887203.1|), blast E-value=0, identity=93.33% | |
| 41-187, LB01914.CR_D19 GC_BGC-19 Bos taurus cDNA clone IMAGE (gb|DV830235.1|), blast E-value=0, identity=93.33% | |
| 265-552, AV664724 Bos taurus brain fetus Bos taurus cDNA clone E1BR044A12 (dbj|AV664724.1|), blast E-value=0, identity=87.33% | |
| 265-552, CR939011 Normalized and Subtracted bovine endometrium tissues (emb|CR939011.1|), blast E-value=0, identity=87.67% | |
| 374-552, 528827 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BM287986.1|), blast E-value=0, identity=95.53% | |
| 265-552, BE04021B2E01 BE04 Normalized and Subtracted bovine embryonic and (gb|CN440179.1|), blast E-value=0, identity=87.33% | |
| 265-552, 1394723 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN545653.1|), blast E-value=0, identity=87.33% | |
| 265-453, LB01914.CR_D19 GC_BGC-19 Bos taurus cDNA clone IMAGE (gb|DV830235.1|), blast E-value=0, identity=90% |
| Similar Transcript(s): 12 entry(ies) | Help | Less info |
PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript
| 41-187, CR939011 Normalized and Subtracted bovine endometrium tissues (emb|CR939011.1|), blast E-value=0, identity=93.33% | |
| 41-111, 64787 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|AW485287.1|), blast E-value=8e-31, identity=100% | |
| 41-159, UI-H-CO0-arl-d-05-0-UI.s1 NCI_CGAP_Sub9 Homo sapiens cDNA clone (gb|BQ028443.1|), blast E-value=3e-27, identity=89.08% | |
| 48-187, BE04021B2E01 BE04 Normalized and Subtracted bovine embryonic and (gb|CN440179.1|), blast E-value=2.00386e-43, identity=92.31% | |
| 41-187, BovGen_15528 normal cattle brain Bos taurus cDNA clone (gb|CO887203.1|), blast E-value=0, identity=93.33% | |
| 41-187, LB01914.CR_D19 GC_BGC-19 Bos taurus cDNA clone IMAGE (gb|DV830235.1|), blast E-value=0, identity=93.33% | |
| 265-552, AV664724 Bos taurus brain fetus Bos taurus cDNA clone E1BR044A12 (dbj|AV664724.1|), blast E-value=0, identity=87.33% | |
| 265-552, CR939011 Normalized and Subtracted bovine endometrium tissues (emb|CR939011.1|), blast E-value=0, identity=87.67% | |
| 374-552, 528827 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BM287986.1|), blast E-value=0, identity=95.53% | |
| 265-552, BE04021B2E01 BE04 Normalized and Subtracted bovine embryonic and (gb|CN440179.1|), blast E-value=0, identity=87.33% | |
| 265-552, 1394723 MARC 7BOV Bos taurus cDNA 5', mRNA sequence (gb|DN545653.1|), blast E-value=0, identity=87.33% | |
| 265-453, LB01914.CR_D19 GC_BGC-19 Bos taurus cDNA clone IMAGE (gb|DV830235.1|), blast E-value=0, identity=90% |
| Aligned organism(s): 3 entry(ies) | More info |
| Aligned organism(s): 3 entry(ies) | Help | Less info |
| 1-583, gnl|bosTau2|chr7 (11320874-11320290) | |
| 1-583, gnl|Hg17|chr19 (11424109-11423541) | |
| 1-583, gnl|Mm7|chr9 (21894160-21893597) |
| Aligned organism(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-583, gnl|bosTau2|chr7 (11320874-11320290) | |
| 1-583, gnl|Hg17|chr19 (11424109-11423541) | |
| 1-583, gnl|Mm7|chr9 (21894160-21893597) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| fce (0.543183) | |
| ece (0.229305) | |
| fcc (0.197785) | |
| fbs (0.175346) | |
| ecc (0.115035) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fce (0.543183) | |
| ece (0.229305) | |
| fcc (0.197785) | |
| fbs (0.175346) | |
| ecc (0.115035) |