Non-Coding RNA Search

Ss1.1-Pig2-113D05.5

Sequence:


               
               GGAGCCCAGCCCCCAGGCACTGTGGGTGCTGAGGCTGAGCCGCCTGGAGACATAACACGA
GCCCACCCTGGTCCAACACAACTGCTTCTCACTTGGGCTCCCAACCACCAGAGGACCTCA
CTCTTGGCACAGTCTCCAAGCTGCCCCAACACCAGGGCTTTAGGCTCCTGCTGGAGGCCT
TAAGCTCCAGGATCCCAGATAGAAGTTCCCAGCACCTGGGTTCAGTGTCTGAATTCAAAG
CCCCTGATCCGAAATACAAGCTCCAGCCCATAGACACTCTCCTCCAGGCCTGGTAGTCTG
TGCCTCCTGGTGCCGGCTTCCTCACAAAGAGAGGGGGCAACACCCTGGGCCCCAGCCAAG
CTCTCTGCTCAATGCCCATCCAAGAAGGCCAAAACCAAGTGAGATGCTGGACCCACATTC
AAATGGGATAATCTTGGGACAGGCAGGCTCTGGTGTGGCCCAAAGCTAAGCGTCCTCATA
GCTGCCCAGTTGGGCTCACTGCTCCTCTGACGGGCTCTGTTCAGCTATCTGCTCAGTGCC
AGCGAAAATACTGTCCCTCCCTGGCAGAGGCCAGACTCGCACAAAGGAAGCAGTAGAGAC
CCCTCCCCATCCCCAAGGCCAGCCCCCAGAGCCCCAGATTCAGGCTGGATGCTGGTATGA
TGGGCACTACCCCAGGAAGAAGCAAGAGGATCTGTGACTTTCCACCTAAAAGGGGGCTCC
TCAAAGCCGATCTTCCTGGGGTTCTGAAGGGTGTAGCTGCAGTGAAACAGACTAGATTCT
AGGAAGCTCTGCCTAGGCCAAAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGCCCAGCCCCCAGGCACTGTGGGTGCTGAGGCTGAGCCGCCTGGAGACATAACACGA
GCCCACCCTGGTCCAACACAACTGCTTCTCACTTGGGCTCCCAACCACCAGAGGACCTCA
CTCTTGGCACAGTCTCCAAGCTGCCCCAACACCAGGGCTTTAGGCTCCTGCTGGAGGCCT
TAAGCTCCAGGATCCCAGATAGAAGTTCCCAGCACCTGGGTTCAGTGTCTGAATTCAAAG
CCCCTGATCCGAAATACAAGCTCCAGCCCATAGACACTCTCCTCCAGGCCTGGTAGTCTG
TGCCTCCTGGTGCCGGCTTCCTCACAAAGAGAGGGGGCAACACCCTGGGCCCCAGCCAAG
CTCTCTGCTCAATGCCCATCCAAGAAGGCCAAAACCAAGTGAGATGCTGGACCCACATTC
AAATGGGATAATCTTGGGACAGGCAGGCTCTGGTGTGGCCCAAAGCTAAGCGTCCTCATA
GCTGCCCAGTTGGGCTCACTGCTCCTCTGACGGGCTCTGTTCAGCTATCTGCTCAGTGCC
AGCGAAAATACTGTCCCTCCCTGGCAGAGGCCAGACTCGCACAAAGGAAGCAGTAGAGAC
CCCTCCCCATCCCCAAGGCCAGCCCCCAGAGCCCCAGATTCAGGCTGGATGCTGGTATGA
TGGGCACTACCCCAGGAAGAAGCAAGAGGATCTGTGACTTTCCACCTAAAAGGGGGCTCC
TCAAAGCCGATCTTCCTGGGGTTCTGAAGGGTGTAGCTGCAGTGAAACAGACTAGATTCT
AGGAAGCTCTGCCTAGGCCAAAGG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               236-352, - strand, RNAz p=0.52536
               

               
               491-608, - strand, RNAz p=0.996798

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               236-352, - strand, RNAz p=0.52536
               

               
               491-608, - strand, RNAz p=0.996798

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               55-799, gnl|bosTau2|chr2 (83824224-83825018)
               

               
               55-799, gnl|Hg17|chr1 (22190236-22189474)
               

               
               55-799, gnl|Mm7|chr4 (136676845-136677568)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               55-799, gnl|bosTau2|chr2 (83824224-83825018)
               

               
               55-799, gnl|Hg17|chr1 (22190236-22189474)
               

               
               55-799, gnl|Mm7|chr4 (136676845-136677568)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               fcc (0.197785)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)

	236-352, - strand, RNAz p=0.52536
	491-608, - strand, RNAz p=0.996798

	55-799, gnl\|bosTau2\|chr2 (83824224-83825018)
	55-799, gnl\|Hg17\|chr1 (22190236-22189474)
	55-799, gnl\|Mm7\|chr4 (136676845-136677568)