Ss1.1-Pig2-113O21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGCCCTGCTCTCTGACCTGGAGACCACAACCTCACACATGCCAAGGTCAGGGGCTCTAAA AGAGCGACCCCCGGAGCCCCTCACGTCTCCTCTGCCACAGATGGGCTCTGGGGAGTCTTC AGGAGCCTCTGGGGACAAGGACCATCTGTACAGTACGGTATGCAAGCCCCGGTCCCCGAA GCCTGCGGCTCCTGCGGCCCCTCCGTTCTCCTCTTCCTGTGGTGTCTTGGGCACGGGTCT CTGTGAGCTAGACCGATTGCTTCAGGAACTTAATGCTACTCAGTTCAACATCACAGATGA AATAATGTCCCAGTTCCCATCTAGCAAGGAATCTGCAGGGGAGAAGAAGGAGGACCCCTC TGAGGACAAGAAAAGGCCCAGCCCCCCTCCCAGCCCAACCCCTGTTCTCCCAAAGCCTTC GGCCACCTCGGCCACCCTGGAGCTAGACAGACTGATGGCCTCACTCTCTGACTTCCGTGT CCAGAACCACCTTCCAGCCTCTGGGCCAACCCAGCCAGCAGTGCCAAGCTCCGTGAATGA GGGCTCCCCATCCCCACCAGGGCCCACTAGCCAGGGCAGCCTAGACACCATGCTGGGGTT GCTTCAGTCTGACCTCAGCCGCCGCGGCGTGCCCACCCAGGCTAAGGGCCTCTGTGGCTC CTGCAATAAACCCATTGCTGGGCAAGTGGTGACAGCGCTTGGCCGTGCTTGGCACCCTGA GCACTTCGTTTGCGGCGGCTGTTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGCCCTGCTCTCTGACCTGGAGACCACAACCTCACACATGCCAAGGTCAGGGGCTCTAAA AGAGCGACCCCCGGAGCCCCTCACGTCTCCTCTGCCACAGATGGGCTCTGGGGAGTCTTC AGGAGCCTCTGGGGACAAGGACCATCTGTACAGTACGGTATGCAAGCCCCGGTCCCCGAA GCCTGCGGCTCCTGCGGCCCCTCCGTTCTCCTCTTCCTGTGGTGTCTTGGGCACGGGTCT CTGTGAGCTAGACCGATTGCTTCAGGAACTTAATGCTACTCAGTTCAACATCACAGATGA AATAATGTCCCAGTTCCCATCTAGCAAGGAATCTGCAGGGGAGAAGAAGGAGGACCCCTC TGAGGACAAGAAAAGGCCCAGCCCCCCTCCCAGCCCAACCCCTGTTCTCCCAAAGCCTTC GGCCACCTCGGCCACCCTGGAGCTAGACAGACTGATGGCCTCACTCTCTGACTTCCGTGT CCAGAACCACCTTCCAGCCTCTGGGCCAACCCAGCCAGCAGTGCCAAGCTCCGTGAATGA GGGCTCCCCATCCCCACCAGGGCCCACTAGCCAGGGCAGCCTAGACACCATGCTGGGGTT GCTTCAGTCTGACCTCAGCCGCCGCGGCGTGCCCACCCAGGCTAAGGGCCTCTGTGGCTC CTGCAATAAACCCATTGCTGGGCAAGTGGTGACAGCGCTTGGCCGTGCTTGGCACCCTGA GCACTTCGTTTGCGGCGGCTGTTC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 1-108, - strand, RNAz p=0.906461 | |
| 9-108, - strand, RNAz p=0.914008 | |
| 488-687, - strand, RNAz p=0.735793 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1-108, - strand, RNAz p=0.906461 | |
| 9-108, - strand, RNAz p=0.914008 | |
| 488-687, - strand, RNAz p=0.735793 |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 1-108, gnl|bosTau2|chr25 (23279606-23279713) | |
| 1-108, gnl|canFam2|chr6 (19787481-19787296) | |
| 1-108, gnl|dasNov1|scaffold_27894 (10397-10182) | |
| 1-108, gnl|echTel1|scaffold_92137 (797-986) | |
| 1-108, gnl|fr1|chrUn (180255757-180255621) | |
| 1-108, gnl|hg17|chr16 (31392226-31392391) | |
| 1-108, gnl|Hg17|chr16 (31392264-31392386) | |
| 1-108, gnl|mm7|chr7 (124344687-124344863) | |
| 1-108, gnl|Mm7|chr7 (124344736-124344858) | |
| 1-108, gnl|monDom2|scaffold_19 (7650700-7650527) | |
| 1-108, gnl|oryCun1|scaffold_163977 (7256-7442) | |
| 1-108, gnl|panTro1|chr18 (32202283-32202448) | |
| 1-108, gnl|rheMac2|chr20 (29568586-29568751) | |
| 1-108, gnl|rn3|chr1 (187655696-187655872) | |
| 141-296, gnl|bosTau2|chr25 (23279962-23280118) | |
| 141-296, gnl|canFam2|chr6 (19787058-19786887) | |
| 141-296, gnl|dasNov1|scaffold_27894 (9933-9762) | |
| 141-296, gnl|echTel1|scaffold_305005 (52977-53147) | |
| 141-296, gnl|fr1|chrUn (180254993-180254829) | |
| 141-296, gnl|hg17|chr16 (31392632-31392803) | |
| 141-296, gnl|Hg17|chr16 (31392643-31392799) | |
| 141-296, gnl|mm7|chr7 (124345113-124345282) | |
| 141-296, gnl|Mm7|chr7 (124345124-124345278) | |
| 141-296, gnl|monDom2|scaffold_19 (7650292-7650120) | |
| 141-296, gnl|oryCun1|scaffold_163977 (7690-7861) | |
| 141-296, gnl|panTro1|chr18 (32202689-32202860) | |
| 141-296, gnl|rheMac2|chr20 (29569001-29569172) | |
| 141-296, gnl|rn3|chr1 (187656119-187656289) | |
| 141-296, gnl|tetNig1|chr2 (5498452-5498298) | |
| 488-687, gnl|bosTau2|chr25 (23280815-23281014) | |
| 488-687, gnl|Hg17|chr16 (31393382-31393581) | |
| 488-687, gnl|Mm7|chr7 (124345855-124346054) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-108, gnl|bosTau2|chr25 (23279606-23279713) | |
| 1-108, gnl|canFam2|chr6 (19787481-19787296) | |
| 1-108, gnl|dasNov1|scaffold_27894 (10397-10182) | |
| 1-108, gnl|echTel1|scaffold_92137 (797-986) | |
| 1-108, gnl|fr1|chrUn (180255757-180255621) | |
| 1-108, gnl|hg17|chr16 (31392226-31392391) | |
| 1-108, gnl|Hg17|chr16 (31392264-31392386) | |
| 1-108, gnl|mm7|chr7 (124344687-124344863) | |
| 1-108, gnl|Mm7|chr7 (124344736-124344858) | |
| 1-108, gnl|monDom2|scaffold_19 (7650700-7650527) | |
| 1-108, gnl|oryCun1|scaffold_163977 (7256-7442) | |
| 1-108, gnl|panTro1|chr18 (32202283-32202448) | |
| 1-108, gnl|rheMac2|chr20 (29568586-29568751) | |
| 1-108, gnl|rn3|chr1 (187655696-187655872) | |
| 141-296, gnl|bosTau2|chr25 (23279962-23280118) | |
| 141-296, gnl|canFam2|chr6 (19787058-19786887) | |
| 141-296, gnl|dasNov1|scaffold_27894 (9933-9762) | |
| 141-296, gnl|echTel1|scaffold_305005 (52977-53147) | |
| 141-296, gnl|fr1|chrUn (180254993-180254829) | |
| 141-296, gnl|hg17|chr16 (31392632-31392803) | |
| 141-296, gnl|Hg17|chr16 (31392643-31392799) | |
| 141-296, gnl|mm7|chr7 (124345113-124345282) | |
| 141-296, gnl|Mm7|chr7 (124345124-124345278) | |
| 141-296, gnl|monDom2|scaffold_19 (7650292-7650120) | |
| 141-296, gnl|oryCun1|scaffold_163977 (7690-7861) | |
| 141-296, gnl|panTro1|chr18 (32202689-32202860) | |
| 141-296, gnl|rheMac2|chr20 (29569001-29569172) | |
| 141-296, gnl|rn3|chr1 (187656119-187656289) | |
| 141-296, gnl|tetNig1|chr2 (5498452-5498298) | |
| 488-687, gnl|bosTau2|chr25 (23280815-23281014) | |
| 488-687, gnl|Hg17|chr16 (31393382-31393581) | |
| 488-687, gnl|Mm7|chr7 (124345855-124346054) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| nlu (0.191681) | |
| spl (0.143184) | |
| pla (0.133672) | |
| cov (0.132153) | |
| bla (0.124347) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.191681) | |
| spl (0.143184) | |
| pla (0.133672) | |
| cov (0.132153) | |
| bla (0.124347) |