Non-Coding RNA Search

Ss1.1-Pig2-114C14.5

Sequence:


               
               CCCCGAAGCCACCGTGCCCCAGTACCATGCGGTGAAGATCCCGAGGGAAGACCGGCAGCA
GTACAAGGAGGAGAAGACAGGCACCATTCTGAGGAACAACTGGGGAAGCCCCCGGCGGGA
GGGCCCCGACGCACACCCCATCCTGGCTGGGGATGGACACCCCGAGCTGGGCTCCGATGG
GCATCCTGTGCCAGGCACTGCCTAGCTTCCTTGGTCCCAGCCTGGCCCGTGGGGCCCATG
CACCCCTTCCCCAGGGATGGGGATGAAGAGGGTAGACCCGGTAGCTGGTGTCCCATCAGG
GTTTGGTACCATCTGTTTCCTCAGGGGCACCTTCTCCCCATGAGGACCACCCCCACACCT
CCCCTTAGGATGCTGTGAGATGCGGGGATAGATCAAGGATGAGTCGTCGGGGAGGGGGAG
AAGGGCAGCAATATCCTGAGGCAACGGTGTCCCTCCCTCTCCCATTCACCCTGTGGGACG
GGACCCCAAGGACCTGTCTCCCTGAAAGTGCCTTAAGCCCAGAGAGCGGGGAGGAGGTTA
TGTCGCTGACTCAGGGGCTCTTCCCTTCCTAGCATCCCCTCTCCTCTGACCTTAGTTTGC
TGCATCGGTCTAGTGGATTTTGTCTATTTATTAAAACAGATATTTGAGGACAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCCGAAGCCACCGTGCCCCAGTACCATGCGGTGAAGATCCCGAGGGAAGACCGGCAGCA
GTACAAGGAGGAGAAGACAGGCACCATTCTGAGGAACAACTGGGGAAGCCCCCGGCGGGA
GGGCCCCGACGCACACCCCATCCTGGCTGGGGATGGACACCCCGAGCTGGGCTCCGATGG
GCATCCTGTGCCAGGCACTGCCTAGCTTCCTTGGTCCCAGCCTGGCCCGTGGGGCCCATG
CACCCCTTCCCCAGGGATGGGGATGAAGAGGGTAGACCCGGTAGCTGGTGTCCCATCAGG
GTTTGGTACCATCTGTTTCCTCAGGGGCACCTTCTCCCCATGAGGACCACCCCCACACCT
CCCCTTAGGATGCTGTGAGATGCGGGGATAGATCAAGGATGAGTCGTCGGGGAGGGGGAG
AAGGGCAGCAATATCCTGAGGCAACGGTGTCCCTCCCTCTCCCATTCACCCTGTGGGACG
GGACCCCAAGGACCTGTCTCCCTGAAAGTGCCTTAAGCCCAGAGAGCGGGGAGGAGGTTA
TGTCGCTGACTCAGGGGCTCTTCCCTTCCTAGCATCCCCTCTCCTCTGACCTTAGTTTGC
TGCATCGGTCTAGTGGATTTTGTCTATTTATTAAAACAGATATTTGAGGACAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|437782|emb|CAA52348.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|437782|emb|CAA52348.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               120-271, - strand, RNAz p=0.983346
               

               
               380-519, - strand, RNAz p=0.991052

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-271, - strand, RNAz p=0.983346
               

               
               380-519, - strand, RNAz p=0.991052

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-655, gnl|bosTau2|chr5 (35346661-35345974)
               

               
               1-655, gnl|Hg17|chr12 (54365313-54364619)
               

               
               1-655, gnl|Mm7|chr10 (128459415-128460054)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-655, gnl|bosTau2|chr5 (35346661-35345974)
               

               
               1-655, gnl|Hg17|chr12 (54365313-54364619)
               

               
               1-655, gnl|Mm7|chr10 (128459415-128460054)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               amn (0.417711)
               

               
               fce (0.271592)
               

               
               nms (0.213858)
               

               
               ton (0.1755)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               fce (0.271592)
               

               
               nms (0.213858)
               

               
               ton (0.1755)
               

               
               ese (0.126502)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)

	120-271, - strand, RNAz p=0.983346
	380-519, - strand, RNAz p=0.991052

	1-655, gnl\|bosTau2\|chr5 (35346661-35345974)
	1-655, gnl\|Hg17\|chr12 (54365313-54364619)
	1-655, gnl\|Mm7\|chr10 (128459415-128460054)

	amn (0.417711)
	fce (0.271592)
	nms (0.213858)
	ton (0.1755)
	ese (0.126502)
	ebs (0.118301)
	jca (0.11396)