Non-Coding RNA Search

Ss1.1-Pig2-114D07.5

Sequence:


               
               CTCTTATCCCGAGAAACCCCATCCTGAACTTCTCTGCCCAGCCTTTGCCTCTGCCCCCCA
AGCCGCCTCTTCCGGGCCCCGGCCAGTACGAGATCGTGGACTACACGGGCCCCCCCAAGC
ACTTCATCTCTAGTGCGTCCTTTGTGTCCAACACCAGCCGGTGGACAGCGGCGCCAGCCC
AGCCAGGCCTGCCCGGCCCAGGTCAGAGGACTGCTTCAAATGACTGTAAAAACCAAACCT
GGAATTGTTTGTCATTCCTGGGCCATCAAGCGCCACTGATTTATGGGCTGTTTGCCAAAC
AGTTTACAGGGGTTAAGCGTGGATCTAGAAGTCTCTTCAGCTCATGCTCTCAGAGTATGA
AAGGTGGAGGGGTTTTGTTTGTTTCTTCGTGTGTGACAGCTGATGACTATGCTCTAGGCC
AGGGATTTATAACTGGTGTTAGAACCGGGCTGCTGCATTTGTCCTTGTCTTGAGCTGCCC
CCTGGACAGAGCCTCCCTCGGTCACTTTGCCATGCAGCTATCTGGGCCGGCTTCTGCACA
GCTCCCCTCAGATTTCAGGTGTCCCTGAAGCTCCAACTCCAGGAGAAGGAGGCTGGTGGC
AGATGCCCCATCTAGAAGCCTGATGCTGAGCCAGGGCCCTGGAGTCACAGGATAGATGAC
ACAGGGCCTCAGCCCCAGCTCTCTCCCCATCCTCTAGCCTTGACTTCCGGACTCCTCCAG
AATTCCAGGAGCTGGAAAGGCCAAAGGCACTGTGACAGGAACATGAAAAGCATGGCAGCG
AGTCACTGTCGTCACGTGGTTACCCACCCGCAGGAGAGGCCGCCACACCGTTTACTGGCC
TGTGCTTGATGGACAGCCACAGGCGGGACCTGCTGGGGCCAGAGCCCTGGGCGCGGTGGT
GTGAGGGGCACCTGCCAATTTTTCCACCTGGACTTTTGCCTCCCCTGGCCCGGTCCCATC
CCCTCCCATCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTTATCCCGAGAAACCCCATCCTGAACTTCTCTGCCCAGCCTTTGCCTCTGCCCCCCA
AGCCGCCTCTTCCGGGCCCCGGCCAGTACGAGATCGTGGACTACACGGGCCCCCCCAAGC
ACTTCATCTCTAGTGCGTCCTTTGTGTCCAACACCAGCCGGTGGACAGCGGCGCCAGCCC
AGCCAGGCCTGCCCGGCCCAGGTCAGAGGACTGCTTCAAATGACTGTAAAAACCAAACCT
GGAATTGTTTGTCATTCCTGGGCCATCAAGCGCCACTGATTTATGGGCTGTTTGCCAAAC
AGTTTACAGGGGTTAAGCGTGGATCTAGAAGTCTCTTCAGCTCATGCTCTCAGAGTATGA
AAGGTGGAGGGGTTTTGTTTGTTTCTTCGTGTGTGACAGCTGATGACTATGCTCTAGGCC
AGGGATTTATAACTGGTGTTAGAACCGGGCTGCTGCATTTGTCCTTGTCTTGAGCTGCCC
CCTGGACAGAGCCTCCCTCGGTCACTTTGCCATGCAGCTATCTGGGCCGGCTTCTGCACA
GCTCCCCTCAGATTTCAGGTGTCCCTGAAGCTCCAACTCCAGGAGAAGGAGGCTGGTGGC
AGATGCCCCATCTAGAAGCCTGATGCTGAGCCAGGGCCCTGGAGTCACAGGATAGATGAC
ACAGGGCCTCAGCCCCAGCTCTCTCCCCATCCTCTAGCCTTGACTTCCGGACTCCTCCAG
AATTCCAGGAGCTGGAAAGGCCAAAGGCACTGTGACAGGAACATGAAAAGCATGGCAGCG
AGTCACTGTCGTCACGTGGTTACCCACCCGCAGGAGAGGCCGCCACACCGTTTACTGGCC
TGTGCTTGATGGACAGCCACAGGCGGGACCTGCTGGGGCCAGAGCCCTGGGCGCGGTGGT
GTGAGGGGCACCTGCCAATTTTTCCACCTGGACTTTTGCCTCCCCTGGCCCGGTCCCATC
CCCTCCCATCTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               857-972, - strand, RNAz p=0.990609

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               857-972, - strand, RNAz p=0.990609

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               11-435, gnl|bosTau2|chr2 (81826176-81826601)
               

               
               11-435, gnl|Hg17|chr1 (24432837-24432423)
               

               
               11-435, gnl|Mm7|chr4 (134912076-134912426)
               


               
               483-642, gnl|bosTau2|chr2 (81828741-81828904)
               

               
               483-642, gnl|canFam2|chr2 (78178723-78178381)
               

               
               483-642, gnl|dasNov1|scaffold_504 (147682-147353)
               

               
               483-642, gnl|hg17|chr1 (24429985-24430332)
               

               
               483-642, gnl|loxAfr1|scaffold_59993 (6969-6716)
               

               
               483-642, gnl|mm7|chr4 (134915358-134915098)
               

               
               483-642, gnl|Mm7|chr4 (134915262-134915414)
               

               
               483-642, gnl|oryCun1|scaffold_206833 (71043-71378)
               

               
               483-642, gnl|panTro1|chr1 (24824342-24824689)
               

               
               483-642, gnl|rheMac2|chr1 (26994946-26995311)
               

               
               483-642, gnl|rn3|chr5 (154317564-154317282)
               


               
               762-972, gnl|bosTau2|chr2 (81829057-81829271)
               

               
               762-972, gnl|Mm7|chr4 (134915522-134915705)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               11-435, gnl|bosTau2|chr2 (81826176-81826601)
               

               
               11-435, gnl|Hg17|chr1 (24432837-24432423)
               

               
               11-435, gnl|Mm7|chr4 (134912076-134912426)
               


               
               483-642, gnl|bosTau2|chr2 (81828741-81828904)
               

               
               483-642, gnl|canFam2|chr2 (78178723-78178381)
               

               
               483-642, gnl|dasNov1|scaffold_504 (147682-147353)
               

               
               483-642, gnl|hg17|chr1 (24429985-24430332)
               

               
               483-642, gnl|loxAfr1|scaffold_59993 (6969-6716)
               

               
               483-642, gnl|mm7|chr4 (134915358-134915098)
               

               
               483-642, gnl|Mm7|chr4 (134915262-134915414)
               

               
               483-642, gnl|oryCun1|scaffold_206833 (71043-71378)
               

               
               483-642, gnl|panTro1|chr1 (24824342-24824689)
               

               
               483-642, gnl|rheMac2|chr1 (26994946-26995311)
               

               
               483-642, gnl|rn3|chr5 (154317564-154317282)
               


               
               762-972, gnl|bosTau2|chr2 (81829057-81829271)
               

               
               762-972, gnl|Mm7|chr4 (134915522-134915705)

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               nmm (0.132802)
               

               
               ebs (0.118301)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nmm (0.132802)
               

               
               ebs (0.118301)

	11-435, gnl\|bosTau2\|chr2 (81826176-81826601)
	11-435, gnl\|Hg17\|chr1 (24432837-24432423)
	11-435, gnl\|Mm7\|chr4 (134912076-134912426)

	483-642, gnl\|bosTau2\|chr2 (81828741-81828904)
	483-642, gnl\|canFam2\|chr2 (78178723-78178381)
	483-642, gnl\|dasNov1\|scaffold_504 (147682-147353)
	483-642, gnl\|hg17\|chr1 (24429985-24430332)
	483-642, gnl\|loxAfr1\|scaffold_59993 (6969-6716)
	483-642, gnl\|mm7\|chr4 (134915358-134915098)
	483-642, gnl\|Mm7\|chr4 (134915262-134915414)
	483-642, gnl\|oryCun1\|scaffold_206833 (71043-71378)
	483-642, gnl\|panTro1\|chr1 (24824342-24824689)
	483-642, gnl\|rheMac2\|chr1 (26994946-26995311)
	483-642, gnl\|rn3\|chr5 (154317564-154317282)

	762-972, gnl\|bosTau2\|chr2 (81829057-81829271)
	762-972, gnl\|Mm7\|chr4 (134915522-134915705)