Ss1.1-Pig2-114E10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACATCCAGGCTTGGGACGAGGCTATCTGAGAAAGTCTGCAGTGTATTGAAGCCACACTC AACATGGACCAGAAGGTTCTGAAGAAACTGGTGGAATCCATCAGTAGTACTGTCAAGAGC TTCAAAAAGAGTGAAGTCGAGAGTCTCATAAGAATTTTTTACAGCTTGGTGGAAAGAGCT GATGTAAGACTCGATAACATTGGACTAGATTGTAATGCATTTCAAATGATCCTGCATAAC ATATTCGGAATGACTGATGATGTACTGATGAATAGAGTGTTTTTTGCATTTGACAAAGAC AATGATAACCTCATAAATGCGAAAGAGTGGGTTAAAGGATTATCAGTGTTTCTTCGAGGG ACTTTTGAAGAAAAGCTGAAGTTCTGTTTTGAAGTTTACTATTTCAATGGTGATGGTTAT ATTTCTCGAGAGAAAATATTTGACATGTTGAAGAACAGTCTACACCAACAGTCACCTGAA GAAGAGACTGATGAAGGAATAACAGAGTTGGTAGATATAACACTGAAGAAAATGGATTAT GACAATGATGGCAAACTATCTTTTATATATATTGACACTTTTGTATTTTGTTAGTCCTTA AATATATTTTAAAAATATAAAATC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACATCCAGGCTTGGGACGAGGCTATCTGAGAAAGTCTGCAGTGTATTGAAGCCACACTC AACATGGACCAGAAGGTTCTGAAGAAACTGGTGGAATCCATCAGTAGTACTGTCAAGAGC TTCAAAAAGAGTGAAGTCGAGAGTCTCATAAGAATTTTTTACAGCTTGGTGGAAAGAGCT GATGTAAGACTCGATAACATTGGACTAGATTGTAATGCATTTCAAATGATCCTGCATAAC ATATTCGGAATGACTGATGATGTACTGATGAATAGAGTGTTTTTTGCATTTGACAAAGAC AATGATAACCTCATAAATGCGAAAGAGTGGGTTAAAGGATTATCAGTGTTTCTTCGAGGG ACTTTTGAAGAAAAGCTGAAGTTCTGTTTTGAAGTTTACTATTTCAATGGTGATGGTTAT ATTTCTCGAGAGAAAATATTTGACATGTTGAAGAACAGTCTACACCAACAGTCACCTGAA GAAGAGACTGATGAAGGAATAACAGAGTTGGTAGATATAACACTGAAGAAAATGGATTAT GACAATGATGGCAAACTATCTTTTATATATATTGACACTTTTGTATTTTGTTAGTCCTTA AATATATTTTAAAAATATAAAATC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 418-535, - strand, RNAz p=0.656449 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 418-535, - strand, RNAz p=0.656449 |
| Aligned organism(s): 35 entry(ies) | More info |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
| 1-121, gnl|bosTau2|chr4 (4220599-4220480) | |
| 1-121, gnl|canFam2|chr14 (21090633-21090854) | |
| 1-121, gnl|dasNov1|scaffold_1013 (204950-204740) | |
| 1-121, gnl|echTel1|scaffold_91648 (73-296) | |
| 1-121, gnl|hg17|chr7 (91831759-91831983) | |
| 1-121, gnl|Hg17|chr7 (91831901-91831785) | |
| 1-121, gnl|loxAfr1|scaffold_22885 (40210-40437) | |
| 1-121, gnl|mm7|chr5 (3577844-3577639) | |
| 1-121, gnl|Mm7|chr5 (3577705-3577816) | |
| 1-121, gnl|panTro1|chr6 (93388874-93389107) | |
| 1-121, gnl|rheMac2|chr3 (124695608-124695381) | |
| 1-121, gnl|rn3|chr4 (27321098-27321299) | |
| 1-121, gnl|xenTro1|scaffold_319 (192549-192748) | |
| 122-275, gnl|bosTau2|chr4 (4212081-4211928) | |
| 122-275, gnl|Hg17|chr7 (91826774-91826621) | |
| 122-275, gnl|Mm7|chr5 (3581629-3581782) | |
| 379-535, gnl|bosTau2|chr4 (4207623-4207468) | |
| 379-535, gnl|canFam2|chr14 (21075608-21075791) | |
| 379-535, gnl|danRer3|chr19 (56354011-56354179) | |
| 379-535, gnl|dasNov1|scaffold_82238 (39020-39199) | |
| 379-535, gnl|echTel1|scaffold_308502 (317616-317430) | |
| 379-535, gnl|fr1|chrUn (87001699-87001876) | |
| 379-535, gnl|galGal2|chr2 (21989851-21990026) | |
| 379-535, gnl|hg17|chr7 (91822665-91822847) | |
| 379-535, gnl|Hg17|chr7 (91822830-91822676) | |
| 379-535, gnl|loxAfr1|scaffold_2379 (72238-72055) | |
| 379-535, gnl|mm7|chr5 (3586575-3586393) | |
| 379-535, gnl|Mm7|chr5 (3586408-3586563) | |
| 379-535, gnl|monDom2|scaffold_7 (60523566-60523748) | |
| 379-535, gnl|oryCun1|scaffold_173814 (89353-89176) | |
| 379-535, gnl|panTro1|chr6 (93379112-93379294) | |
| 379-535, gnl|rheMac2|chr3 (124705472-124705294) | |
| 379-535, gnl|rn3|chr4 (27306270-27306452) | |
| 379-535, gnl|tetNig1|chr21 (1079045-1079220) | |
| 379-535, gnl|xenTro1|scaffold_319 (189370-189545) |
| Aligned organism(s): 35 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-121, gnl|bosTau2|chr4 (4220599-4220480) | |
| 1-121, gnl|canFam2|chr14 (21090633-21090854) | |
| 1-121, gnl|dasNov1|scaffold_1013 (204950-204740) | |
| 1-121, gnl|echTel1|scaffold_91648 (73-296) | |
| 1-121, gnl|hg17|chr7 (91831759-91831983) | |
| 1-121, gnl|Hg17|chr7 (91831901-91831785) | |
| 1-121, gnl|loxAfr1|scaffold_22885 (40210-40437) | |
| 1-121, gnl|mm7|chr5 (3577844-3577639) | |
| 1-121, gnl|Mm7|chr5 (3577705-3577816) | |
| 1-121, gnl|panTro1|chr6 (93388874-93389107) | |
| 1-121, gnl|rheMac2|chr3 (124695608-124695381) | |
| 1-121, gnl|rn3|chr4 (27321098-27321299) | |
| 1-121, gnl|xenTro1|scaffold_319 (192549-192748) | |
| 122-275, gnl|bosTau2|chr4 (4212081-4211928) | |
| 122-275, gnl|Hg17|chr7 (91826774-91826621) | |
| 122-275, gnl|Mm7|chr5 (3581629-3581782) | |
| 379-535, gnl|bosTau2|chr4 (4207623-4207468) | |
| 379-535, gnl|canFam2|chr14 (21075608-21075791) | |
| 379-535, gnl|danRer3|chr19 (56354011-56354179) | |
| 379-535, gnl|dasNov1|scaffold_82238 (39020-39199) | |
| 379-535, gnl|echTel1|scaffold_308502 (317616-317430) | |
| 379-535, gnl|fr1|chrUn (87001699-87001876) | |
| 379-535, gnl|galGal2|chr2 (21989851-21990026) | |
| 379-535, gnl|hg17|chr7 (91822665-91822847) | |
| 379-535, gnl|Hg17|chr7 (91822830-91822676) | |
| 379-535, gnl|loxAfr1|scaffold_2379 (72238-72055) | |
| 379-535, gnl|mm7|chr5 (3586575-3586393) | |
| 379-535, gnl|Mm7|chr5 (3586408-3586563) | |
| 379-535, gnl|monDom2|scaffold_7 (60523566-60523748) | |
| 379-535, gnl|oryCun1|scaffold_173814 (89353-89176) | |
| 379-535, gnl|panTro1|chr6 (93379112-93379294) | |
| 379-535, gnl|rheMac2|chr3 (124705472-124705294) | |
| 379-535, gnl|rn3|chr4 (27306270-27306452) | |
| 379-535, gnl|tetNig1|chr21 (1079045-1079220) | |
| 379-535, gnl|xenTro1|scaffold_319 (189370-189545) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.623441) | |
| ret (0.128733) |