Non-Coding RNA Search

Ss1.1-Pig2-114G06.5

Sequence:


               
               CGGCGCATGTATAAGGTGCCTACCTCTGGGACCTCGGACCGGGAGCCTCCGTTGCCCAGG
TTACCGGGGCCCCGGACCCCAGGCCGTCACTCCAGCTCGTCGTCGGATTCCGCGGACGCC
AGCCCTGTACACACCTCTGGGCCTGCGGCTGCCTACCACTCGGCGTCAGCCGAGTCCATG
GACGAGATTCCGGTGGCTCAGACGCGCCTAGGCAGCGCCGCTCTGGCCGCCGGAGTGGTC
AGGGACCGAGGGTCTGGACTGGCGCTGCAGGCGCTTGCGTCAGCCGCTTTCGTGAGCCGG
AGCAGCGGCAAGCCCGGGGCTCGGGGCAGCCCGGAGGCTCGTCTGGTGTAGCTGGGCAGA
GAATTAGGATGGCAGAGGAGCGGCGGCACCGACTCTCTATGCAACAACCCCACCCCGCCG
CAACGAGTGCACTTTAGGGATCCCTAGGGCCGGCAGGATCGGCCTCCTCCCCCACGACTC
AGTAATACCCGTCCCACCAGCGATGATGCTCCAATAAACTTTTTTTATGCTTTAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCGCATGTATAAGGTGCCTACCTCTGGGACCTCGGACCGGGAGCCTCCGTTGCCCAGG
TTACCGGGGCCCCGGACCCCAGGCCGTCACTCCAGCTCGTCGTCGGATTCCGCGGACGCC
AGCCCTGTACACACCTCTGGGCCTGCGGCTGCCTACCACTCGGCGTCAGCCGAGTCCATG
GACGAGATTCCGGTGGCTCAGACGCGCCTAGGCAGCGCCGCTCTGGCCGCCGGAGTGGTC
AGGGACCGAGGGTCTGGACTGGCGCTGCAGGCGCTTGCGTCAGCCGCTTTCGTGAGCCGG
AGCAGCGGCAAGCCCGGGGCTCGGGGCAGCCCGGAGGCTCGTCTGGTGTAGCTGGGCAGA
GAATTAGGATGGCAGAGGAGCGGCGGCACCGACTCTCTATGCAACAACCCCACCCCGCCG
CAACGAGTGCACTTTAGGGATCCCTAGGGCCGGCAGGATCGGCCTCCTCCCCCACGACTC
AGTAATACCCGTCCCACCAGCGATGATGCTCCAATAAACTTTTTTTATGCTTTAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               142-284, + strand, RNAz p=0.618962

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               142-284, + strand, RNAz p=0.618962

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               142-533, gnl|bosTau2|chr18 (28573103-28572705)
               

               
               142-533, gnl|Hg17|chr16 (65986223-65985829)
               

               
               142-533, gnl|Mm7|chr8 (104071464-104071056)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               142-533, gnl|bosTau2|chr18 (28573103-28572705)
               

               
               142-533, gnl|Hg17|chr16 (65986223-65985829)
               

               
               142-533, gnl|Mm7|chr8 (104071464-104071056)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               cly (0.120642)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               ecc (0.115035)

	142-533, gnl\|bosTau2\|chr18 (28573103-28572705)
	142-533, gnl\|Hg17\|chr16 (65986223-65985829)
	142-533, gnl\|Mm7\|chr8 (104071464-104071056)