Non-Coding RNA Search

Ss1.1-Pig2-114L04.5

Sequence:


               
               CATCAGGATGTGCCATTGCATGTGGTGGTTTGGATAACAAGTGTTCTGTGTACCCACTGA
CGTTTGACAAAAATGAAAACATGGCCGCCAAAAAGAAGTCCGTTGCTATGCACACCAACT
ACCTGTCAGCCTGCAGCTTCACCAACTCTGACATGCAGATCCTGACGGCCAGCGGCGATG
GCACATGCGCCCTGTGGGACGTGGAGAGCGGGCAGCTGCTGCAGAGCTTCCATGGCCACG
GGGCCGACGTGCTTTGCTTGGACCTGGCCCCCTCAGAGACCGGGAACACCTTTGTGTCTG
GGGGATGTGACAAGAAAGCCATGGTGTGGGACATGCGCTCCGGCCAGTGCATACAGGCCT
TTGAAACACACGAATCTGACATCAACAGTGTCCGATACTATCCGAGTGGAGATGCCTTTG
CTTCGGGATCAGATGATGCTACGTGTCGCCTCTACGACCTCCGGGCAGACAGGGAGGTTG
CCATCTATTCCAAGGAGAGTATCATCTTTGGAGCTTCCAGTGTGGACTTCTCCCTCAGCG
GTCGCCTGCTGTTTGCTGGATACAATGATTATACCATCAATGTCTGGGATGTCCTCAAGG
GATCCCGAGTCTCCATCCTGTTCGGACATGAAAACCGTGTTAGTACTCTACGAGTTTCCC
CTGATGGGACTGCTTTTTGCTCAGGATCATGGGATCATACACTCAGGGTCTGGGCTTAAT
CACAGTGAACTCATAGGTACCTGAGGATAGAATTTGAAATCATCATGTGTAAATCTTGCT
TTTAGAGGGTCTGAGAGTTGAATGCAACTTAGCTTAAGGGAGCAGCTCCATGTCTGAAAG
TTCACCACGTGTCTCCAATATTACCATTAAAACCACCATCCTAGAAAGATCCCAGTGTGA
GTCTTCAGCACTCCGAGAACACCTTCAAGTACAGTGTTTTTCATTTTGAACACTTTTTAA
AATGTATGTTTTTAAGGTTATTCTGAAGTATACTATTCTCAACTCATTCTCTTACCAGTA
GAATTCAGCATTTACTATATTCCATATTGTTTCCTTGAATCAGATTTATTTTTCAGAGCA
CTTTAAAAGCTGATTTTTTTCTCAGTGTGCACTGTGATTTTTGGAACCTTCCACTGGAAG
GGTTGATTTTAATGGACTGTGTGAGAGGGACTGTGTTACTTGGTCTTTGAGAGAAGAAAA
TTCCAATTCCAAATGTAATTAGACATCACCTTTTTAAATGTGTTTTTATTGTGAAAGTAT
CTTTTTCAGCCTTGCATCCAGTTGTCTTTCTTTCAGATAAAACATTTTTTTCCATGTATG
TGAACAGTTATAAATTAAGCAGAGATATGTATAAAATGGTAAAATGGACAGAAGGTTTGA
TTTGTGAATCTTATGATGGTGTGAGTGATCATTGTATCACGTGGACAGGACAATTTCTTT
CATTTGAAGGAAGAGCTGAGTGCTGCTTGTGACACAGAAGACAGTAAACTTATTTTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATCAGGATGTGCCATTGCATGTGGTGGTTTGGATAACAAGTGTTCTGTGTACCCACTGA
CGTTTGACAAAAATGAAAACATGGCCGCCAAAAAGAAGTCCGTTGCTATGCACACCAACT
ACCTGTCAGCCTGCAGCTTCACCAACTCTGACATGCAGATCCTGACGGCCAGCGGCGATG
GCACATGCGCCCTGTGGGACGTGGAGAGCGGGCAGCTGCTGCAGAGCTTCCATGGCCACG
GGGCCGACGTGCTTTGCTTGGACCTGGCCCCCTCAGAGACCGGGAACACCTTTGTGTCTG
GGGGATGTGACAAGAAAGCCATGGTGTGGGACATGCGCTCCGGCCAGTGCATACAGGCCT
TTGAAACACACGAATCTGACATCAACAGTGTCCGATACTATCCGAGTGGAGATGCCTTTG
CTTCGGGATCAGATGATGCTACGTGTCGCCTCTACGACCTCCGGGCAGACAGGGAGGTTG
CCATCTATTCCAAGGAGAGTATCATCTTTGGAGCTTCCAGTGTGGACTTCTCCCTCAGCG
GTCGCCTGCTGTTTGCTGGATACAATGATTATACCATCAATGTCTGGGATGTCCTCAAGG
GATCCCGAGTCTCCATCCTGTTCGGACATGAAAACCGTGTTAGTACTCTACGAGTTTCCC
CTGATGGGACTGCTTTTTGCTCAGGATCATGGGATCATACACTCAGGGTCTGGGCTTAAT
CACAGTGAACTCATAGGTACCTGAGGATAGAATTTGAAATCATCATGTGTAAATCTTGCT
TTTAGAGGGTCTGAGAGTTGAATGCAACTTAGCTTAAGGGAGCAGCTCCATGTCTGAAAG
TTCACCACGTGTCTCCAATATTACCATTAAAACCACCATCCTAGAAAGATCCCAGTGTGA
GTCTTCAGCACTCCGAGAACACCTTCAAGTACAGTGTTTTTCATTTTGAACACTTTTTAA
AATGTATGTTTTTAAGGTTATTCTGAAGTATACTATTCTCAACTCATTCTCTTACCAGTA
GAATTCAGCATTTACTATATTCCATATTGTTTCCTTGAATCAGATTTATTTTTCAGAGCA
CTTTAAAAGCTGATTTTTTTCTCAGTGTGCACTGTGATTTTTGGAACCTTCCACTGGAAG
GGTTGATTTTAATGGACTGTGTGAGAGGGACTGTGTTACTTGGTCTTTGAGAGAAGAAAA
TTCCAATTCCAAATGTAATTAGACATCACCTTTTTAAATGTGTTTTTATTGTGAAAGTAT
CTTTTTCAGCCTTGCATCCAGTTGTCTTTCTTTCAGATAAAACATTTTTTTCCATGTATG
TGAACAGTTATAAATTAAGCAGAGATATGTATAAAATGGTAAAATGGACAGAAGGTTTGA
TTTGTGAATCTTATGATGGTGTGAGTGATCATTGTATCACGTGGACAGGACAATTTCTTT
CATTTGAAGGAAGAGCTGAGTGCTGCTTGTGACACAGAAGACAGTAAACTTATTTTAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61808529|ref|XP_615433.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61808529|ref|XP_615433.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               402-600, gnl|bosTau2|chr16 (37615856-37616054)
               

               
               402-600, gnl|Hg17|chr1 (1752864-1752666)
               

               
               402-600, gnl|Mm7|chr4 (154544563-154544761)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               402-600, gnl|bosTau2|chr16 (37615856-37616054)
               

               
               402-600, gnl|Hg17|chr1 (1752864-1752666)
               

               
               402-600, gnl|Mm7|chr4 (154544563-154544761)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               lyg (0.266205)
               

               
               cbe (0.239234)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               cki (0.165235)
               

               
               fat (0.147427)
               

               
               hlv (0.139256)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lyg (0.266205)
               

               
               cbe (0.239234)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               cki (0.165235)
               

               
               fat (0.147427)
               

               
               hlv (0.139256)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	402-600, gnl\|bosTau2\|chr16 (37615856-37616054)
	402-600, gnl\|Hg17\|chr1 (1752864-1752666)
	402-600, gnl\|Mm7\|chr4 (154544563-154544761)

	lyg (0.266205)
	cbe (0.239234)
	nlu (0.191681)
	ill (0.175593)
	cki (0.165235)
	fat (0.147427)
	hlv (0.139256)
	bla (0.124347)
	eep (0.122564)
	spc (0.113366)
	cty (0.10408)