Ss1.1-Pig2-114N15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCATGTGTGCCCTCTGCGGGGGGTACTTCATCGACGCCACTACCATCGTGGAGTGCTTG CATTCCTTCTGCAAAACGTGCATCGTGCGCTACCTGGAGACCAACAAGTACTGCCCCATG TGTGACGTGCAGGTCCACAAAACTCGGCCGCTGCTGAGCATCAGATCTGACAAAACCCTT CAAGACATCGTCTACAAATTGGTACCTGGGCTTTTTAAAGATGAGATGAAACGGCGACGG GATTTCTATGCTGCATACCCCCTGACAGAGGTCCCCAACGGCTCCAGTGAGGACCGCGGA GAGGTCCTGGAGCAGGAGAAGGGGGCGCTGAGCGACGACGAGATCGTCAGCCTCTCCATC GAGTTCTACGAAGGCGTCAGGGACCGGGAGGAGAAGAAGGGCCCCCTGGAGAACGGGGAT GGCGACAAGGAGAAGACAGGGGTGCGCTTCCTGCGATGCCCAGCAGCCATGACCGTCATG CACCTCGCAAAGTTTCTCCGCAACAAGATGGACGTGCCCAGCAAGTACAAGGTGGAGGTT CTCTACGAGGACGAGCCGCTGAAGGAGTACTACACCCTCATGGACATCGCCTACATCTAC CCCTGGCGGAGGAATGGCCCTCTCCCCCTCAAGTACCGAGTCCAGCCAGCCTGCAAGCGG CTCACCTTGCCCACAGCACCCACCCCCTCCGAGGGTACCAATACCAGCGGGGCATCCGAG TGTGAGTCAGTCAGCGACAAGGCTCCCAGCCCTGCCACCTTGCCAGCCACATCCTCCTCC CTGCCCAGCCCAGCCACCCCCTCCCATGGCTCTCCCAGCTCCCACGGCCCCCCTGCCCCG CACCCTACCTCTCCCACTCCCCCTGCAACAGCCAGTGGGGCCACCACTGCTGCCAATGGG GGCACCTCGAACTGCCTGCAGACACCATCCTCCACCAGCAGGGGGCGCAAGATGACTGTC AACGGAGCACCTGTGCCCCCCTTAACTTGAGGAAAGGGACCCTCTTCCTACTTTTCCAGC CAAGCCTCTCTACCCCTCCACTTTTTCTGGGCCCCCTTTTCCACTTCTACTTCCCCAGCT CCTCCCACCTTAGGGGTGGGGGATGGGTTTTATAAATAAATCTATATATATATGTACATA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCATGTGTGCCCTCTGCGGGGGGTACTTCATCGACGCCACTACCATCGTGGAGTGCTTG CATTCCTTCTGCAAAACGTGCATCGTGCGCTACCTGGAGACCAACAAGTACTGCCCCATG TGTGACGTGCAGGTCCACAAAACTCGGCCGCTGCTGAGCATCAGATCTGACAAAACCCTT CAAGACATCGTCTACAAATTGGTACCTGGGCTTTTTAAAGATGAGATGAAACGGCGACGG GATTTCTATGCTGCATACCCCCTGACAGAGGTCCCCAACGGCTCCAGTGAGGACCGCGGA GAGGTCCTGGAGCAGGAGAAGGGGGCGCTGAGCGACGACGAGATCGTCAGCCTCTCCATC GAGTTCTACGAAGGCGTCAGGGACCGGGAGGAGAAGAAGGGCCCCCTGGAGAACGGGGAT GGCGACAAGGAGAAGACAGGGGTGCGCTTCCTGCGATGCCCAGCAGCCATGACCGTCATG CACCTCGCAAAGTTTCTCCGCAACAAGATGGACGTGCCCAGCAAGTACAAGGTGGAGGTT CTCTACGAGGACGAGCCGCTGAAGGAGTACTACACCCTCATGGACATCGCCTACATCTAC CCCTGGCGGAGGAATGGCCCTCTCCCCCTCAAGTACCGAGTCCAGCCAGCCTGCAAGCGG CTCACCTTGCCCACAGCACCCACCCCCTCCGAGGGTACCAATACCAGCGGGGCATCCGAG TGTGAGTCAGTCAGCGACAAGGCTCCCAGCCCTGCCACCTTGCCAGCCACATCCTCCTCC CTGCCCAGCCCAGCCACCCCCTCCCATGGCTCTCCCAGCTCCCACGGCCCCCCTGCCCCG CACCCTACCTCTCCCACTCCCCCTGCAACAGCCAGTGGGGCCACCACTGCTGCCAATGGG GGCACCTCGAACTGCCTGCAGACACCATCCTCCACCAGCAGGGGGCGCAAGATGACTGTC AACGGAGCACCTGTGCCCCCCTTAACTTGAGGAAAGGGACCCTCTTCCTACTTTTCCAGC CAAGCCTCTCTACCCCTCCACTTTTTCTGGGCCCCCTTTTCCACTTCTACTTCCCCAGCT CCTCCCACCTTAGGGGTGGGGGATGGGTTTTATAAATAAATCTATATATATATGTACATA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 652-771, - strand, RNAz p=0.745201 | |
| 812-1140, - strand, RNAz p=0.998464 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 652-771, - strand, RNAz p=0.745201 | |
| 812-1140, - strand, RNAz p=0.998464 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 271-381, gnl|bosTau2|chr19 (31573525-31573415) | |
| 271-381, gnl|Hg17|chr17 (34148641-34148531) | |
| 271-381, gnl|Mm7|chr11 (97801175-97801065) | |
| 431-533, gnl|bosTau2|chr19 (31573102-31573000) | |
| 431-533, gnl|canFam2|chr9 (26824282-26824192) | |
| 431-533, gnl|danRer3|chr24 (10407533-10407615) | |
| 431-533, gnl|dasNov1|scaffold_73850 (9105-9195) | |
| 431-533, gnl|echTel1|scaffold_293906 (6478-6397) | |
| 431-533, gnl|fr1|chrUn (128641247-128641337) | |
| 431-533, gnl|galGal2|chrUn (117412217-117412307) | |
| 431-533, gnl|hg17|chr17 (34148129-34148219) | |
| 431-533, gnl|Hg17|chr17 (34148232-34148130) | |
| 431-533, gnl|loxAfr1|scaffold_964 (125489-125408) | |
| 431-533, gnl|mm7|chr11 (97800720-97800810) | |
| 431-533, gnl|Mm7|chr11 (97800823-97800721) | |
| 431-533, gnl|monDom2|scaffold_18 (47656636-47656726) | |
| 431-533, gnl|oryCun1|scaffold_140577 (9991-9904) | |
| 431-533, gnl|panTro1|chr19 (37364609-37364699) | |
| 431-533, gnl|rheMac2|chr16 (48765723-48765813) | |
| 431-533, gnl|rn3|chr10 (86455388-86455478) | |
| 431-533, gnl|tetNig1|chr18 (1007839-1007929) | |
| 431-533, gnl|xenTro1|scaffold_334 (1221025-1221115) | |
| 612-1140, gnl|bosTau2|chr19 (31571634-31571102) | |
| 612-1140, gnl|Hg17|chr17 (34145380-34144849) | |
| 612-1140, gnl|Mm7|chr11 (97799398-97798866) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 271-381, gnl|bosTau2|chr19 (31573525-31573415) | |
| 271-381, gnl|Hg17|chr17 (34148641-34148531) | |
| 271-381, gnl|Mm7|chr11 (97801175-97801065) | |
| 431-533, gnl|bosTau2|chr19 (31573102-31573000) | |
| 431-533, gnl|canFam2|chr9 (26824282-26824192) | |
| 431-533, gnl|danRer3|chr24 (10407533-10407615) | |
| 431-533, gnl|dasNov1|scaffold_73850 (9105-9195) | |
| 431-533, gnl|echTel1|scaffold_293906 (6478-6397) | |
| 431-533, gnl|fr1|chrUn (128641247-128641337) | |
| 431-533, gnl|galGal2|chrUn (117412217-117412307) | |
| 431-533, gnl|hg17|chr17 (34148129-34148219) | |
| 431-533, gnl|Hg17|chr17 (34148232-34148130) | |
| 431-533, gnl|loxAfr1|scaffold_964 (125489-125408) | |
| 431-533, gnl|mm7|chr11 (97800720-97800810) | |
| 431-533, gnl|Mm7|chr11 (97800823-97800721) | |
| 431-533, gnl|monDom2|scaffold_18 (47656636-47656726) | |
| 431-533, gnl|oryCun1|scaffold_140577 (9991-9904) | |
| 431-533, gnl|panTro1|chr19 (37364609-37364699) | |
| 431-533, gnl|rheMac2|chr16 (48765723-48765813) | |
| 431-533, gnl|rn3|chr10 (86455388-86455478) | |
| 431-533, gnl|tetNig1|chr18 (1007839-1007929) | |
| 431-533, gnl|xenTro1|scaffold_334 (1221025-1221115) | |
| 612-1140, gnl|bosTau2|chr19 (31571634-31571102) | |
| 612-1140, gnl|Hg17|chr17 (34145380-34144849) | |
| 612-1140, gnl|Mm7|chr11 (97799398-97798866) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| amn (0.835422) | |
| elu (0.385356) | |
| pla (0.267344) | |
| ebs (0.236602) | |
| eep (0.122564) | |
| eru (0.120048) | |
| cty (0.10408) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (0.835422) | |
| elu (0.385356) | |
| pla (0.267344) | |
| ebs (0.236602) | |
| eep (0.122564) | |
| eru (0.120048) | |
| cty (0.10408) |