Non-Coding RNA Search

Ss1.1-Pig2-114P14.5

Sequence:


               
               GGAGGAAGATGATGAAGATGAAGATGATGAAGATGAAGTGTCTGAGGGCTCTGAGGTGCC
AGAGGGTGACCGTCCTGCAGGTGCCCAGCACCATCAGCTTAATGGCGAGCGGGGCCCTCA
GAGTGCCAAGGAGAGGGTCAAGGAGTGGACACCCTGTGGACCCCACCAGGGCCAGGATGA
AGGACGGGGGCCAGCGCCAGGCAGTGGCACCCGCCAGGTGTTCTCCATGGCCACCATGAA
TAAGGAAGGGGGATCAGCCTCATCTGCCACTGGGCCAGACTCCCCATCCCCCGTGCCTTT
GCCCCCAGGAAAACCAGCCCTACCTGGGGCTGATGGGACCCCCTTTGGCTGTCCTTCTGG
GCGCAAGGAGAAGCCCTCTGATCCTGTGGAATGGACGGTGACGGATGTGGTAGAGTACTT
CACCGAGGCCGGCTTCCCCGAGCAGGCCACAGCTTTCCAAGAGCAGGAAATTGATGGCAA
GTCTTTGCTGCTCATGCAGCGCACAGATGTGCTGACTGGCCTGTCCATCCGCCTCGGCCC
AGCCCTGAAAATCTACGAGCACCACATCAAGGTGCTGCAACAAGGCCACTTTGAGGATGA
AGACCCTGATGGCTTTCTAGGCTGAGCGCCCAGCCTCACCCCTGCCCCAACCCATTCCAG
TCCCCACCTCACCCAAGACCCCTAGAGTCCAGGAGCTGGACGGGGTACACCCTCAGCCCT
CATGACAGATTCCAGTGAGGGAGCATTCCTCTCAACTCATCTCTTCCCTGTCTCTCCCCA
ACACATATATCCCTGGCCCCCAGCACATCCTGTACTCCATAATAGAGGAGTGTGGGGTGG
GGCAGGGCCTGTTCATTTCACCCCAGGAGGCCAGCCTCTCCCCAAGTCAAGGACATTTTT
AGAAGAAAAAAAATGGGGGTTTCGCATCTCCCCTAGATCCTCTTCAGTTCAGCCAGATGT
TTCCTATATAAAATGTTTTATTCTGCCTGTTCATTTTGGTGGGTGGCCTTTCCTCCCTCC
CCCACCACCCAGGCCCTTCCCCATTCTGTCCTTGGCCTCCAGCCCCTGGGGGCAACTGGG
ATGGGGTCCCTGGGTTTTTCCTACCCTTCCCCTTTCTGTTTGTTGTCGCTCCAGCTGGCT
GTATTGCTTTTTAATATTGCACCGAAGGTTTTTTAAATAAAATTTTAAAAAAAAGAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGGAAGATGATGAAGATGAAGATGATGAAGATGAAGTGTCTGAGGGCTCTGAGGTGCC
AGAGGGTGACCGTCCTGCAGGTGCCCAGCACCATCAGCTTAATGGCGAGCGGGGCCCTCA
GAGTGCCAAGGAGAGGGTCAAGGAGTGGACACCCTGTGGACCCCACCAGGGCCAGGATGA
AGGACGGGGGCCAGCGCCAGGCAGTGGCACCCGCCAGGTGTTCTCCATGGCCACCATGAA
TAAGGAAGGGGGATCAGCCTCATCTGCCACTGGGCCAGACTCCCCATCCCCCGTGCCTTT
GCCCCCAGGAAAACCAGCCCTACCTGGGGCTGATGGGACCCCCTTTGGCTGTCCTTCTGG
GCGCAAGGAGAAGCCCTCTGATCCTGTGGAATGGACGGTGACGGATGTGGTAGAGTACTT
CACCGAGGCCGGCTTCCCCGAGCAGGCCACAGCTTTCCAAGAGCAGGAAATTGATGGCAA
GTCTTTGCTGCTCATGCAGCGCACAGATGTGCTGACTGGCCTGTCCATCCGCCTCGGCCC
AGCCCTGAAAATCTACGAGCACCACATCAAGGTGCTGCAACAAGGCCACTTTGAGGATGA
AGACCCTGATGGCTTTCTAGGCTGAGCGCCCAGCCTCACCCCTGCCCCAACCCATTCCAG
TCCCCACCTCACCCAAGACCCCTAGAGTCCAGGAGCTGGACGGGGTACACCCTCAGCCCT
CATGACAGATTCCAGTGAGGGAGCATTCCTCTCAACTCATCTCTTCCCTGTCTCTCCCCA
ACACATATATCCCTGGCCCCCAGCACATCCTGTACTCCATAATAGAGGAGTGTGGGGTGG
GGCAGGGCCTGTTCATTTCACCCCAGGAGGCCAGCCTCTCCCCAAGTCAAGGACATTTTT
AGAAGAAAAAAAATGGGGGTTTCGCATCTCCCCTAGATCCTCTTCAGTTCAGCCAGATGT
TTCCTATATAAAATGTTTTATTCTGCCTGTTCATTTTGGTGGGTGGCCTTTCCTCCCTCC
CCCACCACCCAGGCCCTTCCCCATTCTGTCCTTGGCCTCCAGCCCCTGGGGGCAACTGGG
ATGGGGTCCCTGGGTTTTTCCTACCCTTCCCCTTTCTGTTTGTTGTCGCTCCAGCTGGCT
GTATTGCTTTTTAATATTGCACCGAAGGTTTTTTAAATAAAATTTTAAAAAAAAGAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|51873978|gb|AAH80588.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51873978|gb|AAH80588.1|

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               103-1071, - strand, RNAz p=0.539057
               

               
               464-582, - strand, RNAz p=0.853996
               

               
               661-884, - strand, RNAz p=0.996738
               

               
               1077-1206, - strand, RNAz p=0.957593

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               103-1071, - strand, RNAz p=0.539057
               

               
               464-582, - strand, RNAz p=0.853996
               

               
               661-884, - strand, RNAz p=0.996738
               

               
               1077-1206, - strand, RNAz p=0.957593

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               64-257, gnl|bosTau2|chr7 (7729397-7729590)
               

               
               64-257, gnl|canFam2|chr20 (51431203-51431004)
               

               
               64-257, gnl|echTel1|scaffold_306135 (352-551)
               

               
               64-257, gnl|hg17|chr19 (14060878-14061077)
               

               
               64-257, gnl|Hg17|chr19 (14061073-14060880)
               

               
               64-257, gnl|loxAfr1|scaffold_93023 (25-224)
               

               
               64-257, gnl|mm7|chr8 (82577003-82576804)
               

               
               64-257, gnl|Mm7|chr8 (82576806-82576999)
               

               
               64-257, gnl|monDom2|scaffold_159 (1329193-1329392)
               

               
               64-257, gnl|oryCun1|scaffold_196788 (11621-11827)
               

               
               64-257, gnl|panTro1|chr20 (14695358-14695557)
               

               
               64-257, gnl|rheMac2|chr19 (13777354-13777554)
               

               
               64-257, gnl|rn3|chr19 (25843115-25843314)
               


               
               464-1207, gnl|bosTau2|chr7 (7730098-7730852)
               

               
               464-1207, gnl|Hg17|chr19 (14060390-14059653)
               

               
               464-1207, gnl|Mm7|chr8 (82577473-82578201)
               


               
               997-1206, gnl|bosTau2|chr24 (28587390-28587190)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               64-257, gnl|bosTau2|chr7 (7729397-7729590)
               

               
               64-257, gnl|canFam2|chr20 (51431203-51431004)
               

               
               64-257, gnl|echTel1|scaffold_306135 (352-551)
               

               
               64-257, gnl|hg17|chr19 (14060878-14061077)
               

               
               64-257, gnl|Hg17|chr19 (14061073-14060880)
               

               
               64-257, gnl|loxAfr1|scaffold_93023 (25-224)
               

               
               64-257, gnl|mm7|chr8 (82577003-82576804)
               

               
               64-257, gnl|Mm7|chr8 (82576806-82576999)
               

               
               64-257, gnl|monDom2|scaffold_159 (1329193-1329392)
               

               
               64-257, gnl|oryCun1|scaffold_196788 (11621-11827)
               

               
               64-257, gnl|panTro1|chr20 (14695358-14695557)
               

               
               64-257, gnl|rheMac2|chr19 (13777354-13777554)
               

               
               64-257, gnl|rn3|chr19 (25843115-25843314)
               


               
               464-1207, gnl|bosTau2|chr7 (7730098-7730852)
               

               
               464-1207, gnl|Hg17|chr19 (14060390-14059653)
               

               
               464-1207, gnl|Mm7|chr8 (82577473-82578201)
               


               
               997-1206, gnl|bosTau2|chr24 (28587390-28587190)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               lnt (0.284616)
               

               
               ecc (0.23007)
               

               
               ton (0.1755)
               

               
               csp (0.161186)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.284616)
               

               
               ecc (0.23007)
               

               
               ton (0.1755)
               

               
               csp (0.161186)
               

               
               pla (0.133672)
               

               
               ese (0.126502)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)

	103-1071, - strand, RNAz p=0.539057
	464-582, - strand, RNAz p=0.853996
	661-884, - strand, RNAz p=0.996738
	1077-1206, - strand, RNAz p=0.957593

	64-257, gnl\|bosTau2\|chr7 (7729397-7729590)
	64-257, gnl\|canFam2\|chr20 (51431203-51431004)
	64-257, gnl\|echTel1\|scaffold_306135 (352-551)
	64-257, gnl\|hg17\|chr19 (14060878-14061077)
	64-257, gnl\|Hg17\|chr19 (14061073-14060880)
	64-257, gnl\|loxAfr1\|scaffold_93023 (25-224)
	64-257, gnl\|mm7\|chr8 (82577003-82576804)
	64-257, gnl\|Mm7\|chr8 (82576806-82576999)
	64-257, gnl\|monDom2\|scaffold_159 (1329193-1329392)
	64-257, gnl\|oryCun1\|scaffold_196788 (11621-11827)
	64-257, gnl\|panTro1\|chr20 (14695358-14695557)
	64-257, gnl\|rheMac2\|chr19 (13777354-13777554)
	64-257, gnl\|rn3\|chr19 (25843115-25843314)

	464-1207, gnl\|bosTau2\|chr7 (7730098-7730852)
	464-1207, gnl\|Hg17\|chr19 (14060390-14059653)
	464-1207, gnl\|Mm7\|chr8 (82577473-82578201)

	997-1206, gnl\|bosTau2\|chr24 (28587390-28587190)

	lnt (0.284616)
	ecc (0.23007)
	ton (0.1755)
	csp (0.161186)
	pla (0.133672)
	ese (0.126502)
	eep (0.122564)
	cly (0.120642)
	eru (0.120048)
	jca (0.11396)
	jej (0.0989218)