Non-Coding RNA Search

Ss1.1-Pig2-115H24.5

Sequence:


               
               GCGCAGTGAGTAGCAGTTTCCTTGTCTCCTGGACTCCTCCGCTTCCGCCCTAGATCAAAC
CCTGGCCGGGCCGGCCACTGGGTGGTCATGGAGTCCACACTGGGCGCGGGCATCGCGATG
GCCGAGGCGCTGCAGAACCAGCTGCCCTGGTTGGAGAACGTGTGGCTCTGGGTCACCTTT
CTGGGCGACCCCAAAAGCCTCTTTCTGTTCTACTTCCCTGCGGCCTACTACGCCTCTCGC
CGGGTGGGCATCGCGGTACTCTGGATCAGCCTCATCACCGAGTGGCTCAACCTCGTCTTC
AAGTGGTTTCTGTTTGGAGACAGGCCCTTTTGGTGGGTCCACGAGTCTGGGTACTACAGC
CAGGCGCCGGCCCAGGTGCACCAGTTCCCCTCTTCTTGTGAAACTGGTCCAGGCAGCCCT
TCTGGACACTGTATGATCACAGGAGCAGCCCTCTGGCCCATAATGACAGCCATCTCTTCC
CAGATGGCCACTCGAACCCACAGCCGCTGGGTGAGGGTGATCCCTAGTCTGGCTTATTGC
ACCTTCCTGCTGGCTGTCGGCTTGTCCCGGGTCTTCCTCTTAGCACATTTCCCTCACCAG
GTGCTGGCTGGCCTAATAACTGGTGCTGTCCTGGGCTGGCTGATGACCCCCCGGGTCCCC
ATGGAACGGGAGCTAAGCTTCTACGGGTTGACCTCGCTGGCTCTCTTGCTGGGTGCCAGC
CTCATCTATTGGACCCTCTTTACGCTGGGCCTGGATCTTTCTTGGTCCATCAGCCTAGCC
TCTAAGTGGTGTGAGCGGCCCGAGTGGGTGCACTTGGACAGCCGACCCTTTGCCTCCCTG
AGCCGTGACTCAGGAGCTGCCCTGGGTCTGGGCATCGCTCTGCACTCTCCCTGCTATGCC
CAGGTACGGCGGGCACACCTGGGCTATGGCCAGAAGCTAGCCTGCCTCGTACTGGCCATG
GGGCTGCTGGGGCCCCTGGACTGGCTGGGCTACCCGCCGCAGATCAGCCTTTTCTACATC
TTCAATTTCCTCAAGTACACCCTCTGGCCATGCCTGGTCCTGGCCCTCGTGCCCTGGGTG
GTACACACATTCAGTGCCCAGGAAGCACCACCCATCCGCTCTTCCTGACTCTGGGGGCCT
CCTATGGCCACTCTCCCTCTCACAAAGCCAACGCTCCGTGCCCTCCATACTCCAGGAGGC
AGCCCCGTCCCCCTCCAGCCCCGTAGCCGGCCCGGCTCGTCCTGAATTTTCCACTTCTCC
CACCTCCTGGTCCCACCCCACAGAAGGGCCTTCTCTGTGCCAGGAAAGCTGGTCCTCCTC
CTGCCTTCCCTCCCAAGACCCCAAAGAACAGAGGCAACGGCAAGACCAGTGGGTTCCTGT
AACACTGTGAGGGGCTCAGGGCAGCCCCAATAAAGCCCTTCAACACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGCAGTGAGTAGCAGTTTCCTTGTCTCCTGGACTCCTCCGCTTCCGCCCTAGATCAAAC
CCTGGCCGGGCCGGCCACTGGGTGGTCATGGAGTCCACACTGGGCGCGGGCATCGCGATG
GCCGAGGCGCTGCAGAACCAGCTGCCCTGGTTGGAGAACGTGTGGCTCTGGGTCACCTTT
CTGGGCGACCCCAAAAGCCTCTTTCTGTTCTACTTCCCTGCGGCCTACTACGCCTCTCGC
CGGGTGGGCATCGCGGTACTCTGGATCAGCCTCATCACCGAGTGGCTCAACCTCGTCTTC
AAGTGGTTTCTGTTTGGAGACAGGCCCTTTTGGTGGGTCCACGAGTCTGGGTACTACAGC
CAGGCGCCGGCCCAGGTGCACCAGTTCCCCTCTTCTTGTGAAACTGGTCCAGGCAGCCCT
TCTGGACACTGTATGATCACAGGAGCAGCCCTCTGGCCCATAATGACAGCCATCTCTTCC
CAGATGGCCACTCGAACCCACAGCCGCTGGGTGAGGGTGATCCCTAGTCTGGCTTATTGC
ACCTTCCTGCTGGCTGTCGGCTTGTCCCGGGTCTTCCTCTTAGCACATTTCCCTCACCAG
GTGCTGGCTGGCCTAATAACTGGTGCTGTCCTGGGCTGGCTGATGACCCCCCGGGTCCCC
ATGGAACGGGAGCTAAGCTTCTACGGGTTGACCTCGCTGGCTCTCTTGCTGGGTGCCAGC
CTCATCTATTGGACCCTCTTTACGCTGGGCCTGGATCTTTCTTGGTCCATCAGCCTAGCC
TCTAAGTGGTGTGAGCGGCCCGAGTGGGTGCACTTGGACAGCCGACCCTTTGCCTCCCTG
AGCCGTGACTCAGGAGCTGCCCTGGGTCTGGGCATCGCTCTGCACTCTCCCTGCTATGCC
CAGGTACGGCGGGCACACCTGGGCTATGGCCAGAAGCTAGCCTGCCTCGTACTGGCCATG
GGGCTGCTGGGGCCCCTGGACTGGCTGGGCTACCCGCCGCAGATCAGCCTTTTCTACATC
TTCAATTTCCTCAAGTACACCCTCTGGCCATGCCTGGTCCTGGCCCTCGTGCCCTGGGTG
GTACACACATTCAGTGCCCAGGAAGCACCACCCATCCGCTCTTCCTGACTCTGGGGGCCT
CCTATGGCCACTCTCCCTCTCACAAAGCCAACGCTCCGTGCCCTCCATACTCCAGGAGGC
AGCCCCGTCCCCCTCCAGCCCCGTAGCCGGCCCGGCTCGTCCTGAATTTTCCACTTCTCC
CACCTCCTGGTCCCACCCCACAGAAGGGCCTTCTCTGTGCCAGGAAAGCTGGTCCTCCTC
CTGCCTTCCCTCCCAAGACCCCAAAGAACAGAGGCAACGGCAAGACCAGTGGGTTCCTGT
AACACTGTGAGGGGCTCAGGGCAGCCCCAATAAAGCCCTTCAACACTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q7YSF2_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q7YSF2_BOVIN

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               121-280, + strand, RNAz p=0.801514
               

               
               764-962, - strand, RNAz p=0.980282
               

               
               1043-1161, - strand, RNAz p=0.638466
               

               
               1275-1426, - strand, RNAz p=0.980383

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-280, + strand, RNAz p=0.801514
               

               
               764-962, - strand, RNAz p=0.980282
               

               
               1043-1161, - strand, RNAz p=0.638466
               

               
               1275-1426, - strand, RNAz p=0.980383

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               3-307, gnl|bosTau2|chr19 (38206395-38206091)
               

               
               3-307, gnl|Hg17|chr17 (39503777-39504079)
               

               
               3-307, gnl|Mm7|chr11 (102298879-102299184)
               


               
               502-625, gnl|bosTau2|chr19 (38202952-38202829)
               

               
               502-625, gnl|Hg17|chr17 (39507861-39507984)
               

               
               502-625, gnl|Mm7|chr11 (102301786-102301909)
               


               
               764-1426, gnl|bosTau2|chr19 (38202293-38201643)
               

               
               764-1426, gnl|Hg17|chr17 (39508573-39509233)
               

               
               764-1426, gnl|Mm7|chr11 (102302481-102303113)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-307, gnl|bosTau2|chr19 (38206395-38206091)
               

               
               3-307, gnl|Hg17|chr17 (39503777-39504079)
               

               
               3-307, gnl|Mm7|chr11 (102298879-102299184)
               


               
               502-625, gnl|bosTau2|chr19 (38202952-38202829)
               

               
               502-625, gnl|Hg17|chr17 (39507861-39507984)
               

               
               502-625, gnl|Mm7|chr11 (102301786-102301909)
               


               
               764-1426, gnl|bosTau2|chr19 (38202293-38201643)
               

               
               764-1426, gnl|Hg17|chr17 (39508573-39509233)
               

               
               764-1426, gnl|Mm7|chr11 (102302481-102303113)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               fce (0.271592)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               jca (0.22792)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               ebs (0.236602)
               

               
               ece (0.229305)
               

               
               jca (0.22792)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               nbm (0.0993246)
               

               
               eje (0.0988338)

	121-280, + strand, RNAz p=0.801514
	764-962, - strand, RNAz p=0.980282
	1043-1161, - strand, RNAz p=0.638466
	1275-1426, - strand, RNAz p=0.980383

	3-307, gnl\|bosTau2\|chr19 (38206395-38206091)
	3-307, gnl\|Hg17\|chr17 (39503777-39504079)
	3-307, gnl\|Mm7\|chr11 (102298879-102299184)

	502-625, gnl\|bosTau2\|chr19 (38202952-38202829)
	502-625, gnl\|Hg17\|chr17 (39507861-39507984)
	502-625, gnl\|Mm7\|chr11 (102301786-102301909)

	764-1426, gnl\|bosTau2\|chr19 (38202293-38201643)
	764-1426, gnl\|Hg17\|chr17 (39508573-39509233)
	764-1426, gnl\|Mm7\|chr11 (102302481-102303113)

	fce (0.271592)
	ebs (0.236602)
	ece (0.229305)
	jca (0.22792)
	mas (0.210305)
	fcc (0.197785)
	pla (0.133672)
	cov (0.132153)
	nbm (0.0993246)
	eje (0.0988338)