Non-Coding RNA Search

Ss1.1-Pig2-115I21.5

Sequence:


               
               TTTACTGTCGTTTTCATTCTCCCTTTCGCTGCTGCTCTTCATTTCGCACTGTTGAGACCA
AGTGGTCTCCACGCTGTTGACCTCGCTCCACTCCTCAGCCCACTCGTGGGTCCTGGGGCC
GTCTTTGCAGAGCCACCACGGGGTTTGCACTCAGGGAGGGGCTGGGGGTTGATGGAGCTG
GGGGGCCCCAAGAGTGAGCTCAGAAAAGGCGCCTGATCTTGGGGGCGCTGGCCCAAGGAC
ACCCCAATTGCTGCTTAGTCACTGTGCCTAGTCTAATGCCCCCCAGAGCGTCACGGGGGG
TACGCGTGTGTTTGTGTGTGTGAGGGGCCCCACCAAGGGCATGGTGGGGTCTAAAGTGTG
CGTTCATGTGAATCCAGAGCCTTGTTCAGCAAAGCCACGACTGGGAAAGGCAGTGGGAGT
GGCTGCGACCCATAGCCCAGGAGTCAAAGAGGGGGTTGCTGCCACCAGCAGTAGGCAGGG
AGAGTGGAAGTGCTCATGTAGACACGTCTATTTTTCTAAGCTGTGGGGGGTGTCTCCAAA
GAGCAGGCGCACCTGCATCGTGCCAACCTCACTCTACCCCAAAGTGTGTGTGGAACCCTG
GGGTGCCAGAGCACCAAGAAAGCTGACCCTCTATGTTTCAATAGCTGTTGTTTTGTTTTT
CACTTGGGATGGAGTAGGGGAAGGGCTGAGTAGTCCCTGGAACCCCACGTTCTGCAGATG
GCCATCTCGTACTGGGCCGGACGTGCAGACTCAGGTGAAAGGGGATCACTCAGGGGCCCC
ACCCTGGAGGGCTGACATGTCTTTGGCCCTGGGATCCAGTTCAAGGGACTCTCAGTTGAA
TTTCCTCCTTGTTTTGTTTTGCTTTTTTCCTCCTTTTAAGGAATTTGAAGCTAAGAAAAG
TTTTGTGCTTGGGGGGGGTTGATGGACAAAGGTTATAGCTGATTAAATATGGTCTAACTT
ATTGATACTGGTTTTTTTTCTTTTAATATTGTACTGTGGAGAAAAACTATTTTGAGCCAT
GGAGTTGGTGTTTACAAGAACTTTTCCCTTTTGCCAAAATGTTACAATTGAAAGGCATCT
GCATCTTCAGTTCCCTGATATTTTCTTAAAAGATCTAGTGTCCTTTTTGTACACTAAACA
GGTGAATGCTGATTTTTTTTTCAACCTACAATAAATTTCACTGAACTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTACTGTCGTTTTCATTCTCCCTTTCGCTGCTGCTCTTCATTTCGCACTGTTGAGACCA
AGTGGTCTCCACGCTGTTGACCTCGCTCCACTCCTCAGCCCACTCGTGGGTCCTGGGGCC
GTCTTTGCAGAGCCACCACGGGGTTTGCACTCAGGGAGGGGCTGGGGGTTGATGGAGCTG
GGGGGCCCCAAGAGTGAGCTCAGAAAAGGCGCCTGATCTTGGGGGCGCTGGCCCAAGGAC
ACCCCAATTGCTGCTTAGTCACTGTGCCTAGTCTAATGCCCCCCAGAGCGTCACGGGGGG
TACGCGTGTGTTTGTGTGTGTGAGGGGCCCCACCAAGGGCATGGTGGGGTCTAAAGTGTG
CGTTCATGTGAATCCAGAGCCTTGTTCAGCAAAGCCACGACTGGGAAAGGCAGTGGGAGT
GGCTGCGACCCATAGCCCAGGAGTCAAAGAGGGGGTTGCTGCCACCAGCAGTAGGCAGGG
AGAGTGGAAGTGCTCATGTAGACACGTCTATTTTTCTAAGCTGTGGGGGGTGTCTCCAAA
GAGCAGGCGCACCTGCATCGTGCCAACCTCACTCTACCCCAAAGTGTGTGTGGAACCCTG
GGGTGCCAGAGCACCAAGAAAGCTGACCCTCTATGTTTCAATAGCTGTTGTTTTGTTTTT
CACTTGGGATGGAGTAGGGGAAGGGCTGAGTAGTCCCTGGAACCCCACGTTCTGCAGATG
GCCATCTCGTACTGGGCCGGACGTGCAGACTCAGGTGAAAGGGGATCACTCAGGGGCCCC
ACCCTGGAGGGCTGACATGTCTTTGGCCCTGGGATCCAGTTCAAGGGACTCTCAGTTGAA
TTTCCTCCTTGTTTTGTTTTGCTTTTTTCCTCCTTTTAAGGAATTTGAAGCTAAGAAAAG
TTTTGTGCTTGGGGGGGGTTGATGGACAAAGGTTATAGCTGATTAAATATGGTCTAACTT
ATTGATACTGGTTTTTTTTCTTTTAATATTGTACTGTGGAGAAAAACTATTTTGAGCCAT
GGAGTTGGTGTTTACAAGAACTTTTCCCTTTTGCCAAAATGTTACAATTGAAAGGCATCT
GCATCTTCAGTTCCCTGATATTTTCTTAAAAGATCTAGTGTCCTTTTTGTACACTAAACA
GGTGAATGCTGATTTTTTTTTCAACCTACAATAAATTTCACTGAACTG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               535-670, - strand, RNAz p=0.993289
               

               
               782-886, - strand, RNAz p=0.877734

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               535-670, - strand, RNAz p=0.993289
               

               
               782-886, - strand, RNAz p=0.877734

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               5-1188, gnl|bosTau2|chr7 (1897869-1896633)
               

               
               5-1188, gnl|Hg17|chr19 (18415745-18414475)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-1188, gnl|bosTau2|chr7 (1897869-1896633)
               

               
               5-1188, gnl|Hg17|chr19 (18415745-18414475)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               cov (0.396458)
               

               
               fat (0.294855)
               

               
               fce (0.271592)
               

               
               mgp (0.230681)
               

               
               aor (0.195274)
               

               
               fty (0.17584)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cov (0.396458)
               

               
               fat (0.294855)
               

               
               fce (0.271592)
               

               
               mgp (0.230681)
               

               
               aor (0.195274)
               

               
               fty (0.17584)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)

	535-670, - strand, RNAz p=0.993289
	782-886, - strand, RNAz p=0.877734

	5-1188, gnl\|bosTau2\|chr7 (1897869-1896633)
	5-1188, gnl\|Hg17\|chr19 (18415745-18414475)

	cov (0.396458)
	fat (0.294855)
	fce (0.271592)
	mgp (0.230681)
	aor (0.195274)
	fty (0.17584)
	eye (0.170503)
	nco (0.161734)
	pla (0.133672)
	eep (0.122564)
	pgl (0.118483)
	ecc (0.115035)