Ss1.1-Pig2-115P07.5
Sequence: | Distiller database | More info |
Sequence: | Distiller database | Help | Less info |
CAGCCGTGGTCGCGTGAGGCCCGGCCCGCGCCCCCGCCCAAGTGTCTGTTATCCTCCCGG TCCACAACGCTGAGCCCTGGCTGGACGAGTGCTTGGGGTCCGTTTTGCAGCAGGACTTTG AAGGCCGCCTGGAGCTCTCCATTTTTAATGATGCCAGCAAGGACAAGTCCATGGCTGTCA TTGAAAAATGGAAAGAGAAGCTGGAAGCTTCCGGCATCCTCGTGGTCGTTGGCGGGCACG ACTCTCCTTCTCCCCGGGGAGTCGGATATTCTAAAAATCAAGCAGTAGCACAGAGCTCAG GAGCTTACCTTTGCTTTCTGGATTCTGATGACGTGATGATGCCCCAGAGAGTGAGGCTGC AACACGCGGCGGCTGCTCAGCACCCGACTAGTATCATCGGCTGCCAGGTGCAGAGGGAGC CCCCCAACTCCACCCAGCGGTACACACGGTGGCTCAACCAGCTGGAGCCCGGCCAGCTGC TCACCCAGGCCTTACGCTGTGCTCTTTAAGCACCCGAAGCGTTTGAAAGTATCATCCGAA TCCAGACGTCCTTCTTGAGCCTTTCCTGAGACTCAGGGTGGACTCTTTGGCGCACATCAC AGCCCGTAGCTTATGGAGTCTGTTTCCGTTTGTTCTGGAAGCTTCCTGGGACACACCAGA |
Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
CAGCCGTGGTCGCGTGAGGCCCGGCCCGCGCCCCCGCCCAAGTGTCTGTTATCCTCCCGG TCCACAACGCTGAGCCCTGGCTGGACGAGTGCTTGGGGTCCGTTTTGCAGCAGGACTTTG AAGGCCGCCTGGAGCTCTCCATTTTTAATGATGCCAGCAAGGACAAGTCCATGGCTGTCA TTGAAAAATGGAAAGAGAAGCTGGAAGCTTCCGGCATCCTCGTGGTCGTTGGCGGGCACG ACTCTCCTTCTCCCCGGGGAGTCGGATATTCTAAAAATCAAGCAGTAGCACAGAGCTCAG GAGCTTACCTTTGCTTTCTGGATTCTGATGACGTGATGATGCCCCAGAGAGTGAGGCTGC AACACGCGGCGGCTGCTCAGCACCCGACTAGTATCATCGGCTGCCAGGTGCAGAGGGAGC CCCCCAACTCCACCCAGCGGTACACACGGTGGCTCAACCAGCTGGAGCCCGGCCAGCTGC TCACCCAGGCCTTACGCTGTGCTCTTTAAGCACCCGAAGCGTTTGAAAGTATCATCCGAA TCCAGACGTCCTTCTTGAGCCTTTCCTGAGACTCAGGGTGGACTCTTTGGCGCACATCAC AGCCCGTAGCTTATGGAGTCTGTTTCCGTTTGTTCTGGAAGCTTCCTGGGACACACCAGA |
Coded protein: 1 entry(ies) | More info |
Aligned organism(s): 24 entry(ies) | More info |
Aligned organism(s): 24 entry(ies) | Help | Less info |
44-162, gnl|bosTau2|chr19 (44038814-44038696) | |
44-162, gnl|canFam2|chr4 (65550159-65550045) | |
44-162, gnl|canFam2|chrUn (12143856-12143996) | |
44-162, gnl|echTel1|scaffold_273049 (1790-1607) | |
44-162, gnl|echTel1|scaffold_273049 (1655-1763) | |
44-162, gnl|fr1|chrUn (277325093-277324921) | |
44-162, gnl|galGal2|chr18 (2962713-2962531) | |
44-162, gnl|hg17|chr17 (78599810-78599996) | |
44-162, gnl|Hg17|chr17 (78599951-78599833) | |
44-162, gnl|hg17|chr6 (47444639-47444765) | |
44-162, gnl|loxAfr1|scaffold_57846 (8257-8440) | |
44-162, gnl|loxAfr1|scaffold_57846 (8407-8284) | |
44-162, gnl|mm7|chr11 (121780078-121780249) | |
44-162, gnl|mm7|chr11 (121780220-121780105) | |
44-162, gnl|Mm7|chr11 (121780219-121780101) | |
44-162, gnl|monDom2|scaffold_88 (1752592-1752780) | |
44-162, gnl|oryCun1|scaffold_179360 (44206-44032) | |
44-162, gnl|oryCun1|scaffold_179360 (44066-44181) | |
44-162, gnl|panTro1|chr19 (82415957-82416143) | |
44-162, gnl|panTro1|chr5 (48212023-48212149) | |
44-162, gnl|rheMac2|chr16 (78567932-78568117) | |
44-162, gnl|rheMac2|chr4 (47181299-47181425) | |
44-162, gnl|rn3|chrUn (5952261-5952090) | |
44-162, gnl|rn3|chrUn (5952119-5952234) |
Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
44-162, gnl|bosTau2|chr19 (44038814-44038696) | |
44-162, gnl|canFam2|chr4 (65550159-65550045) | |
44-162, gnl|canFam2|chrUn (12143856-12143996) | |
44-162, gnl|echTel1|scaffold_273049 (1790-1607) | |
44-162, gnl|echTel1|scaffold_273049 (1655-1763) | |
44-162, gnl|fr1|chrUn (277325093-277324921) | |
44-162, gnl|galGal2|chr18 (2962713-2962531) | |
44-162, gnl|hg17|chr17 (78599810-78599996) | |
44-162, gnl|Hg17|chr17 (78599951-78599833) | |
44-162, gnl|hg17|chr6 (47444639-47444765) | |
44-162, gnl|loxAfr1|scaffold_57846 (8257-8440) | |
44-162, gnl|loxAfr1|scaffold_57846 (8407-8284) | |
44-162, gnl|mm7|chr11 (121780078-121780249) | |
44-162, gnl|mm7|chr11 (121780220-121780105) | |
44-162, gnl|Mm7|chr11 (121780219-121780101) | |
44-162, gnl|monDom2|scaffold_88 (1752592-1752780) | |
44-162, gnl|oryCun1|scaffold_179360 (44206-44032) | |
44-162, gnl|oryCun1|scaffold_179360 (44066-44181) | |
44-162, gnl|panTro1|chr19 (82415957-82416143) | |
44-162, gnl|panTro1|chr5 (48212023-48212149) | |
44-162, gnl|rheMac2|chr16 (78567932-78568117) | |
44-162, gnl|rheMac2|chr4 (47181299-47181425) | |
44-162, gnl|rn3|chrUn (5952261-5952090) | |
44-162, gnl|rn3|chrUn (5952119-5952234) |
Expressed library(ies): 3 entry(ies) | More info |
Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
nms (0.213858) | |
fli (0.202881) | |
ecc (0.115035) |