Non-Coding RNA Search

Ss1.1-Pig2-116B19.5

Sequence:


               
               TGGCAAGGAAACTTGGCTGCCCAGGAGCCACACCTGTTTCAACCGGCTGGACCTCCCACC
ATACAAGAGCTACGAACAGCTGAAAGAGAAGCTGCTGTACGCCATCGAGGAGACCGAGGG
CTTCGGACAGGAGTAGCTGAGGCCGCCCTCTCCCACGCCCCCCAGCACATATGCAGTCCT
GAGTCCTCCCTGCCCAAGAGGCTGCTGGCTGCGCAGCCCCCGGGAGGCCCCTGCAGACGG
TGGCCCCGTGTGGGACCACAGCGTCGTAGGCTGGTGGCGGCAGATCCTGCCTTCAAGAGG
TCCCGCCTGCCCCTCCCTCCTACCCACTGGTGGCAGCCTGGAATAAAGCCCCCATGTCAC
CCTCGGCCCCATCACCCACTGCAGTGTCGGGAGAGCTGCCCCTCTGTGCAGAGCTCACCC
TCCTTCTCCCCAAGACCCGCCCTATCTGTGTGTGAGGGTGCCAGGCAGGGCGCCCGTGCC
CAAGCCCTGGGCCTCACGGGCTGGCTAGGTGAGAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCAAGGAAACTTGGCTGCCCAGGAGCCACACCTGTTTCAACCGGCTGGACCTCCCACC
ATACAAGAGCTACGAACAGCTGAAAGAGAAGCTGCTGTACGCCATCGAGGAGACCGAGGG
CTTCGGACAGGAGTAGCTGAGGCCGCCCTCTCCCACGCCCCCCAGCACATATGCAGTCCT
GAGTCCTCCCTGCCCAAGAGGCTGCTGGCTGCGCAGCCCCCGGGAGGCCCCTGCAGACGG
TGGCCCCGTGTGGGACCACAGCGTCGTAGGCTGGTGGCGGCAGATCCTGCCTTCAAGAGG
TCCCGCCTGCCCCTCCCTCCTACCCACTGGTGGCAGCCTGGAATAAAGCCCCCATGTCAC
CCTCGGCCCCATCACCCACTGCAGTGTCGGGAGAGCTGCCCCTCTGTGCAGAGCTCACCC
TCCTTCTCCCCAAGACCCGCCCTATCTGTGTGTGAGGGTGCCAGGCAGGGCGCCCGTGCC
CAAGCCCTGGGCCTCACGGGCTGGCTAGGTGAGAAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5BTM6_SCHJA

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5BTM6_SCHJA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               193-429, - strand, RNAz p=0.886287

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               193-429, - strand, RNAz p=0.886287

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               36-514, gnl|bosTau2|chr18 (30544083-30544567)
               

               
               36-514, gnl|Hg17|chr16 (68531244-68531725)
               

               
               36-514, gnl|Mm7|chr8 (106157029-106157500)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               36-514, gnl|bosTau2|chr18 (30544083-30544567)
               

               
               36-514, gnl|Hg17|chr16 (68531244-68531725)
               

               
               36-514, gnl|Mm7|chr8 (106157029-106157500)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nca (0.136874)
               

               
               eru (0.120048)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nca (0.136874)
               

               
               eru (0.120048)

	36-514, gnl\|bosTau2\|chr18 (30544083-30544567)
	36-514, gnl\|Hg17\|chr16 (68531244-68531725)
	36-514, gnl\|Mm7\|chr8 (106157029-106157500)